2009 Publications

  1. L M Vigneron, R C Boman, J-P Ponthot, P A Robe, S K Warfield and J G Verly. Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery. Journal of Computational and Applied Mathematics. 2009, in press.

  2. A Akselrod-Ballin, D Bock, R C Reid, and S K Warfield. Improved registration for large electron microscopy images. In: Biomedical Imaging: From Nano to Macro, 2009 (ISBI 2009), pages 434-437 2009. [PDF]

  3. N I Weisenfeld and S K Warfield. A data-driven approach to discovering common brain anatomy. In: Biomedical Imaging: From Nano to Macro, 2009 (ISBI 2009), pages 217-220 2009. [PDF]

  4. O Commowick, S K Warfield and G Malandain. Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. Med Image Comput Comput Assist Interv., 12(Pt 2):993-1000 2009. [PDF]

  5. A Akselrod-Ballin, D Bock, R C Reid and S K Warfield. Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma. Med Image Comput Comput Assist Interv., 12(Pt 1):632-9 2009. [PDF]

  6. G R Joldes, A Wittek, M Couton, S K Warfield and K Miller. Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms. Med Image Comput Comput Assist Interv., 12(Pt 2):300-7 2009. [PDF]

  7. A Gholipour and S K Warfield. Super-resolution reconstruction of fetal brain MRI. In:MICCAI Workshop on Image Analysis for the Developing Brain (IADB’2009), C. Studholme and F. Rousseau, Eds., London, UK, 24 Sept. 2009, pp. 45–52. [PDF]

  8. O Commowick and S K Warfield. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. Inf Process Med Imaging., 21:701-12 2009.

  9. M Schaap, C T Metz, T van Walsum, A G van der Giessen, A C Weustink, N R Mollet, C Bauer, H Bogunović, C Castro, X Deng, E Dikici, T O'Donnell, M Frenay, O Friman, M Hernández Hoyos, P H Kitslaar, K Krissian, C Kühnel, M A Luengo-Oroz, M Orkisz, O Smedby, M Styner, A Szymczak, H Tek, C Wang, S K Warfield, S Zambal, Y Zhang, G P Krestin, and W J Niessen. Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Med Image Anal., 13(5):701-14 2009. [WWW] [doi: 10.1016/j.media.2009.06.003]

  10. L M Vigneron, M P Duflot, P A Robe, S K Warfield, and J G Verly . 2D XFEM-based modeling of retraction and successive resections for preoperative image update. Comput Aided Surg., Jul 27:1-20 2009. [WWW] [doi: 10.1080/10929080903052677]

  11. M J N L Benders, F Groenendaal, F van Bel, R Ha Vinh, J Dubois, J F Lazeyras, S K Warfield, P S Huppi, and L S de Vries. Brain development of the preterm neonate after neonatal hydrocortisone treatment for chronic lung disease. Pediatric Research 66(5):555-9 2009. [WWW] [doi: 10.1203/PDR.0b013e3181b3aec5]

  12. N I Weisenfeld and S K Warfield. Automatic Segmentation of Newborn Brain MRI. Neuroimage, 47(2):564-72 2009. [WWW] [doi: 10.1016/j.neuroimage.2009.04.068] [PDF]

  13. O Commowick and S K Warfield. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis. IEEE TMI, 28(6):838-846
    2009. [WWW] [doi: 10.1109/TMI.2008.2010438] [PDF]

  14. M Rullmann, A Anwander, M Dannhauer, S K Warfield, F H Duffy, and C H Wolters. EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. Neuroimage, 44(2):399-410 Jan 2009. [WWW] [doi: 10.1016/j.neuroimage.2008.09.009 ] [PDF]

  15. D K Thompson, S J Wood, L W Doyle, S K Warfield, G F Egan, and T E Inder. MR-determined hippocampal asymmetry in full-term and preterm neonates. Hippocampus, 19(2):118-23 2009. [WWW] [doi: 10.1002/hipo.20492] [PDF]

  16. I Zelman, M Galun, A Akselrod-Ballin, Y Yekutieli, B Hochner and T Flash. Nearly-automatic motion capture system for tracking octopus arm movements in 3D space. Journal of Neuroscience Methods, 182(1):97-109 2009. [WWW] [doi: 10.1016/j.jneumeth.2009.05.022]

  17. A Akselrod-Ballin, M Galun, J M Gomori, M Filippi, P Valsasina, R Basri and A Brandt. Automatic segmentation and classification of multiple sclerosis in multi-channel MRI., IEEE Trans Biomed Eng, 56(10):2461-9 2009. [WWW] [doi: 10.1109/TBME.2008.926671]

  18. D Hyde, R Schulz, E Miller, D Brooks, and V Ntziachristos. Performance Dependence of Hybrid X-ray CT-FMT on the Optical Forward Problem. J Opt Soc Am A Opt Image Sci Vis., 26(4):919-23 2009. [WWW]

  19. D Hyde, R DeKleine, S MacLaurin, E Miller, D Brooks, T Krucker, and V Ntziachristos. Hybrid FMT-CT Method for In Vivo Imaging of Amyloid-B Plaques in a Murine Model for Alzheimer's Disease. NeuroImage, 44(4):1304-11 2009. [WWW] [doi: 10.1016/j.neuroimage.2008.10.038]

  20. B Scherrer, F Forbes, C Garbay, and M Dojat. Distributed Local MRF Models for Tissue and Structure Brain Segmentation. IEEE TMI, 28(8):1278-95. [WWW] [doi: 10.1109/TMI.2009.2014459]

  21. B Scherrer, M Dojat, F Forbes, and C Garbay. Agentification of Markov model-based segmentation: Application to magnetic resonance brain scans. Artif Intell Med., 46(1):81-95 2009. [WWW] [doi: 10.1016/j.artmed.2008.08.012]

  22. R O Suarez, S Whalen, A P Nelson, Y Tie, M E Meadows, A Radmanesh and A J Golby. Threshold-independent functional MRI determination of language dominance: a validation study against clinical gold standards. Epilepsy Behav., 16(2):288-97 2009. [WWW] [doi: 10.1016/j.yebeh.2009.07.034]

  23. Y Tie, R O Suarez, S Whalen, A Radmanesh, I H Norton and A J Golby. Comparison of blocked and event-related fMRI related designs for pre-surgical language mapping. NeuroImage, 47(Suppl 2):T107-15 2009. [WWW] [doi: 10.1016/j.neuroimage.2008.11.020]

  24. S Peled, S Whalen, F A Jolesz, and A J Golby. High b-value apparent diffusion-weighted images from CURVE-ball DTI. J Magn Reson., 30(1):243-8 2009. [WWW] [doi: 10.1002/jmri.21808]

  25. P J White, S Whalen, S C Tang, G T Clement, and A J Golby. An interoperative brain-shift monitor using shear-mode transcranial ultrasound: Preliminary results. J Ultrasound Med., 28(2):191-203. [WWW]

  26. A A Qazi, A Radmanesh, L O'Donnell, G Kindlmann, S Peled, S Whalen, C F Westin, and A J Golby. Resolving crossings in the corticospinal tract by two-tensor streamline tractography: Method and clinical assessment using fMRI. NeuroImage, 47(Suppl 2):T98-106 2009. [WWW] [doi: 10.1016/j.neuroimage.2008.06.034]

  27. P Wintermark, E Roulet-Perez, M Maeder-Ingvar, A C Moessinger, F Gudinchet, and R Meuli. Perfusion abnormalities in hemimegalencephaly. Neuropedatrics, 40(2):92-6 2009. [WWW] [doi: 10.1055/s-0029-1237721]

  28. T Laswad, P Wintermark, L Alamo, A Moessinger, R Meuli, and F Gudinchet. Method for performing cerebral perfusion-weighted MRI in neonates. Pediatr. Radiol., 39(3):260-4 2009. [WWW] [doi: 10.1007/s00247-008-1081-9]

  29. L Vigneron, M Duflot, P Robe, SK Warfield, J Verly. 2D XFEM-Based Modeling of Retraction and Successive Resections for Preoperative Image Update.Comput Aided Surg. 14(1-3):1-20 2009. [PDF]