Warfield Publications

 

  1. Gholipour A, Estroff JA, Barnewolt CE, Robertson RL, Grant PE, Gagoski B, Warfield SK, Afacan O, Connolly SA, Neil JJ, Wolfberg A, Mulkern RV. Fetal MRI: a technical update with educational aspirations. Concepts in Magnetic Resonance Part A, 7 April 2015, DOI: 10.1002/cmr.a.21321 [PDF]

  2. Shaikh H, Lechpammer M, Jensen FE, Warfield SK, Hansen AH, Kosaras B, Shevell M, Wintermark P. Increased Brain Perfusion Persists over the First Month of Life in Term Asphyxiated Newborns Treated with Hypothermia: Does it Reflect Activated Angiogenesis? Transl Stroke Res. 2015 Jan 27. [PDF]

  3. Tomas-Fernandez X, Warfield SK. A Model of Population and Subject (MOPS) Intensities with Application to Multiple Sclerosis Lesion Segmentation. IEEE Trans Med Imaging. 2015 Jan 19. [PDF]

  4. Velasco-Annis C, Gholipour A, Afacan O, Prabhu SP, Estroff JA, Warfield SK. Normative biometrics for fetal ocular growth using volumetric MRI reconstruction. Prenat Diagn. 2015 Jan 19. [PDF]

  5. Taimouri V, Kurugol S, Clancy S, Freiman M, Warfield SK. Structural and Diffusion Weighted MRI Registration for Biomarker Fusion in Crohn's Disease Diagnosis. ISBI 2015 [PDF]

  6. Taimouri V, Gholipour A, Velasco-Annis C, Estroff JA, Warfield SK. A Template-To-Slice Block Matching Approach for Automatic Localization of Brain in Fetal MRI. ISBI 2015 [PDF]  

  7. Erem B, Hyde D, Peters J, Duffy F, Brooks D, Warfield SK. Combined Delay and Graph Embedding of Epileptic Discharges in EEG Reveals Complex and Recurrent Nonlinear Dynamics. ISBI 2015 [PDF]

  8. Erem B, Afacan O, Gholipour A, Warfield SK. Real-Time Dynamic Prediction of Motion during Prospective Motion Correction Helps Reduce Errors Caused by Fast Motions and Delayed Motion Measurements. ISMRM 2015 Abstract [PDF]

  9. Tomas-Fernandez X. Arcuate fasciculus delineation by means of diffusion compartment imaging based tractography. ISMRM 2015 Abstract [PDF]

  10. Kurugol S, Freiman M, Afacan O, Clancy S, Warfield SK. Spatially Constrained Probability Distribution Model of Incoherent Motion (SPIM) Improves Longitdinal Reproducibility of Quantitative Diffusion Weighted MRI. ISMRM Abstract [PDF]

  11. Kurugol S, Freiman M, Afacan O, Warfield SK. A Spatially Constrained Probability Distribution Model of Incoherent Motion (SPIM) In Quantitative Diffusion Weighted MRI. ISMRM Abstract [PDF]

  12. Taimouri V, Freiman M, Warfield SK. Spatially-Constrained Incoherent Motion (SCIM) Model Improves the Robustness of Fast and Slow Diffusion Parameter Estimation from DW-MRI Data in Various Multiple b-Value Acquisition Protocols. ISMRM 2015 Abstract [PDF]

  13. Scherrer B, Gholipour A, Afacan O, Prabhu S, Warfield SK. Accelerated motion-robust non-Cartesian multi-shot diffusion-weighted imaging with reconstruction in the image space. ISMRM 2015 Abstract [PDF]

  14. Stamm A, Afacan O, Scherrer B, Singh J, Warfield SK. In-vivo High Resolution Imaging of Fine-Scale Anatomical Structures at 3T with Simultaneous Bias/Variance Reduction. ISMRM 2015 Abstract [PDF]

  15. Kurugol S, Freiman M, Domachevsky L, Afacan O, Warfield SK. Quantitative Diffusion-Weighted MR Imaging of Crohn's Disease using a Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM). ISMRM Diffusion Weighted Imaging Outside Brain Workshop, Boston, MA. April 2015. [PDF]

  16. Tomas-Fernandez X and Warfield SK. Brain Mapping: An Encyclopedic Reference Chapter. 2015, vol. 1, pp. 323-332. [PDF]

  17. Taimouri V, Afacan O, Perez-Rossello JM, Callahan MJ, Mulkern RV, Warfield SK, Freiman M. Spatially Constrained Incoherent Motion Method Improves Diffusion-Weighted MRI Signal Decay Analysis in the Liver and Spleen. Medical Physics, 2015 42(4), 1895-1903. [PDF]

  18. A Gholipour, C Limperopoulos, S Clancy, C Clouchoux, A Akhondi-Asl, J A Estroff, and S K Warfield. Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. MICCAI 2014. [PDF]

  19. R O Suarez, V Taimouri, K Boyer, C Vega, A A Rotenberg, J R Madsen, T Loddenkemper, D H Frank, S Prabhu, S K Warfield. Passive fMRI mapping of language function for pediatric epilepsy surgery: validation using Wada, ECS, and FMAER. Epilepsy Research. 2014 Dec;108(10):1874-88. [PDF]

  20. A Gholipour, EY Lee, SK Warfield. The anatomy and art of writing a successful grant application: a practical step-by-step approach. Pediatr Radiol. 2014. Dec;44(12):1512-7. doi: 10.1007/s00247-014-3051-8. [PDF]

  21. M Taquet, B Scherrer, J M Peters, S P Prabhu, S K Warfield. A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure. MICCAI 2014. [PDF]

  22. A Akhondi-Asl, O Afacan, R V Mulkern, S K Warfield. T2 -Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph. MICCAI 2014. [PDF]

  23. C Siversson, A Akhondi-Asl, S Bixby, YJ Kim, SK Warfield. Three-dimensional hip cartilage quality assessment of morphology and dGEMRIC by planar maps and automated segmentation. Osteoarthritis Cartilage. 2014 Oct;22(10):1511-5. doi: 10.1016/j. [PDF]

  24. A Akhondi-Asl, L Hoyte, ME Lockhart, SK Warfield. A logarithmic opinion pool based STAPLE algorithm for the fusion of segmentations with associated reliability weights. IEEE Trans Med Imaging. 2014 Oct;33(10):1997-2009. doi: 10.1109/TMI.2014.2329603. [PDF]

  25. D E Hyde, F H Duffy, S K Warfield. Voxel Based Dipole Orientation Constraints for Distributed Current Estimation. IEEE Transactions on Biomedical Engineering 2014 Jul; 61(7): 2028-2040. [PDF]

  26. A Hunold, J Haueisen, B Ahtam, C Doshi, C Harini, S Camposano, SK Warfield, PE Grant, Y Okada, C Papadelis. Localization of the epileptongenic foci in tuberous sclerosis complex: a pediatric case report. Front Hum Neurosci. 2014 Mar 26;8:175. [PDF]

  27. D K Thompson, K J Lee, G F Egan, S K Warfield, L W Doyle, P J Anderson, T E Inder. Regional white matter microstructure in very preterm infants: Predictors and 7 year outcomes. Cortex. 2014 Mar;52:60-74. doi: 10.1016/j.cortex.2013.11.010.

  28. R R Garlapati, A Roy, G R Joldes, A Wittek, A Mostayed, B Doyle, S K Warfield, R Kikinis, N Knuckey, S Bunt, K Miller. More accurate neuronavigation data provided by biomechanical modeling instead of rigid registration. J Neurosurg.
    2014 Jan 24.

  29. A Suinesiaputra, B R Cowan, A O Al-Agamy, M A Elattar, N Ayache, A S Fahmy, A M Khalifa, P Medrano-Gracia, M P Jolly, A H Kadish, D C Lee, J Margeta, S K Warfield, A A Young. A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Med Image Anal. 2014 Jan;18(1):50-62. doi: 10.1016/j.media.2013.09.001

  30. V Taimouri, A Akhondi-Asl, X Tomas-Fernandez, J M Peters, S P Prabhu, A Poduri, M Takeoka, T Loddenkemper, A M Bergin, C Harini, J R Madsen, S K Warfield. Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy. Int J Comput Assist Radiol Surg. 2014 Jan;9(1):91-105. doi:10.1007/s11548-013-0915-6

  31. P Wintermark, A Hansen, S K Warfield, D Dukhovny, J S Soul. Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia. Neuroimage. 2014 Jan 15;85 Pt 1:287-93. doi: 10.1016/j.neuroimage.2013.04.072

  32. C F Benjamin, J M Singh, S P Prabhu, S K Warfield. Optimization of tractography of the optic radiations. Hum Brain Mapp. 2014 Feb;35(2):683-97. doi: 10.1002/hbm.22204

  33. A Stamm, B Scherrer, O Commonwick, C Barillot, S K Warfield. Fast and robust detection of the optimal number of fascicles in diffusion images using model averaging theory. ISMRM 2014. Abstract [PDF]

  34. A Stamm, B Scherrer, S Baraldo, O Commonwick, S K Warfield. Non central chi estimation of multi-compartment models improves model selection by reducing overfitting. ISMRM 2014 Abstract [PDF]

  35. O Afacan, A Gholipour, RV Mulkern, C Barnewolt, S Bairdain, J Estroff, S Connolly, S K Warfield. Assessment of fetal lung maturation from diffusion weighted MRI at 3T. ISMRM 2014 Abstract [PDF]

  36. A Gholipur, O Afacan, B Scherrer, B Erem, S K Warfield. Diffusion Weighted MRI of Moving Subjects based on Motion-Induced Random Oversampling. ISMRM 2014. Abstract [PDF]

  37. A Gholipour, O Afacan, I Aganj, S K Warfield. Super-Resolution MRI Reconstruction in Image, Frequency, and Wavelet Domains. ISMRM 2014. Abstract [PDF]

  38. B Scherrer, A Gholipour, M Sahin, S P Prabhu, S K Warfield. Super-resolution multi-fascicle imaging reveals the presence of both radial and tangential diffusion in the mature cortex using a clinical scanner. ISMRM 2014. Abstract [PDF]

  39. B Scherrer, M Taquet, M Sahin, S P Prabhu, S K Warfield. A novel biophysical model that characterizes the distribution of anisotropic micro-structural environments with DWI (DIAMOND). ISMRM 2014. Abstract [PDF]

  40. B Scherrer, M Taquet, M Sahin, S P Prabhu, S K Warfield. Quantitative evaluation of biophysical models of the diffusion with in vivo data by assessment of the generalization error. ISMRM 2014. Abstract [PDF]

  41. A Akhondi-Asl, O Afacan, R V Mulkern, S K Warfield. T2-relaxometry for Myelin Water Fraction Estimation using a Mixture of Wald Distributions. ISMRM 2014. Abstract [PDF]

  42. M Freiman, O Afacan, R V Mulkern, S K Warfield. Simultaneous Model Estimation and Image Reconstruction (SMEIR) to improve Multi b-Value body Diffusion-Weighted imaging. ISMRM 2014. Abstract [PDF]

  43. M Taquet, B Scherrer., O Commowick, J M Peters, M Sahin, B Macq B., S K Warfield. A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure, IEEE Trans Med Imaging, 2013.[WWW] [PDF]

  44. D K Hammond, B Scherrer, S K Warfield. Cortical Graph Smoothing: A Novel Method for Exploiting DWI-Derived Anatomical Brain Connectivity to Improve EEG Source Estimation. IEEE Trans Med Imaging. 32(10):1952-63, 2013. [WWW] [doi: 10.1109/TMI.2013.2271486] [PDF].

  45. V Taimouri, A Akhondi-Asl, X Tomas-Fernandez, J M Peters, S P Prabhu, A Poduri, M Takeoka, T Loddenkemper, A M Bergin, C Harini, J R Madsen, S K Warfield. Electrode localization for planning surgical resection of the epileptogenic zone in
    pediatric epilepsy.
     Int J Comput Assist Radiol Surg. 2013 Jun 23, in press. [WWW] [doi: ] [PDF]

  46. A Mostayed, R R Garlapati, G R Joldes, A Wittek, A Roy, R Kikinis, S K Warfield, K Miller. Biomechanical Model as a Registration Tool for Image-Guided Neurosurgery: Evaluation Against BSpline Registration. Ann Biomed Eng. 41(11):2409-25, 2013. [WWW] [doi: 10.1007/s10439-013-0838-y] [PDF]
    .
  47. A Akhondi-Asl, S K Warfield. Simultaneous truth and performance level estimation through fusion of probabilistic segmentations. IEEE Trans Med Imaging. 32(10):1840-52, 2013. [WWW] [doi: 10.1109/TMI.2013.2266258] [PDF]

  48. P Wintermark, M Lechpammer, S K Warfield, B Kosaras, M Takeoka, A Poduri, J R Madsen, A M Bergin, S Whalen, F E Jensen. Perfusion Imaging of Focal Cortical Dysplasia Using Arterial Spin Labeling: Correlation With Histopathological
    Vascular Density. 
    J Child Neurol. 28(11):1474-1482, 2013. [WWW] [doi:] [PDF]

  49. P Wintermark, A Hansen, S K Warfield, D Dukhovny, J S Soul. Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia.
    Neuroimage. S1053-8119(13)00419-9, 2013. [WWW] [doi: 10.1016/j.neuroimage.2013.04.072] [PDF]

  50. J M Peters, M Taquet, C Vega, SS Jeste, I S Fernández, J Tan, CA 3rd Nelson, M Sahin, S K Warfield. Brain functional networks in syndromic and non-syndromic autism: a graph theoretical study of EEG connectivity. BMC Med. 11:54, 2013. [WWW] [doi: 10.1186/1741-7015-11-54] [PDF]

  51. G McAnulty, F H Duffy, S Kosta, N I Weisenfeld, S K Warfield, S C Butler, M Alidoost, J H Bernstein, R Robertson, D Zurakowski, H Als. School-age effects of the newborn individualized developmental care and assessment program for preterm 
    infants with intrauterine growth restriction: preliminary findings.
     BMC Pediatr. 13:25, 2013. [WWW] [doi: 10.1186/1471-2431-13-25] [PDF]

  52. N I Weisenfeld, J M Peters, P T Tsai, S P Prabhu, K A Dies, M Sahin, S K Warfield. A magnetic resonance imaging study of cerebellar volume in tuberous sclerosis complex. Pediatr Neurol. 48(2):105-10, 2013. [WWW] [doi: 10.1016/j.pediatrneurol.2012.10.011] [PDF]

  53. D K Thompson, C Adamson, G Roberts, N Faggian, S J Wood, S K Warfield, L W Doyle, P J Anderson, G F Egan, T E Inder. Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: perinatal predictors and functional significance at age 7. Neuroimage. 70:278-87, 2013. [WWW] [doi: 10.1016/j.neuroimage.2012.12.053] [PDF]

  54. A Akhondi-Asl, S K Warfield. Estimation of the prior distribution of ground truth in the STAPLE algorithm: an empirical Bayesian approach. Med Image Comput Comput Assist Interv. 2012;15(Pt 1):593-600. [PDF]

  55. B Schrerrer, S K Warfield. Accurate estimation of a multiple fascicle model is enabled by manipulation of gradient strength in a two-shell HARDI to achieve low TE. ISMRM 2013. Abstract [PDF]

  56. B Scherrer, M Taquet, O Afacan, S K Warfield. Does the signal arising from a single fascicle significantly deviates from a monoexponential decay with a clinical scanner? ISMRM 2013. Abstract [PDF]

  57. Gholipour A, Estroff JA, Warfield SK. Motion-robust super-resolution fetal brain MRI. ISMRM 2013. Abstract [PDF]

  58. Gholipour A, Limperopoulos C, Clouchoux C, Estroff JA, Warfield SK. Diffeomorphic construction of a normative spatiotemporal fetal brain MRI template, ISMRM 2013. Abstract [PDF]

  59. Afacan O, Gholipour A, Warfield SK. Motion detection for diffusion weighted MRI using EPI phase correction lines, ISMRM 2013. Abstract. [PDF]

  60. B Scherrer, A Schwartzman, M Taquet, S P Prabhu, M Sahin, S K Warfield. DIAMOND: a novel biophysical diffusion model that characterizes the distribution of anisotropic micro-structural environments with DWI. ISMRM 2013. Workshop Abstract. [PDF]

  61. B Scherrer, A Schwartzman, M Taquet, S Prabhu, M Sahin, A Akhondi-Asl, S K Warfield. Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-weighted imaging (DIAMOND). MICCAI 2013;16(Pt 3):518-26. [PDF]

  62. M Taquet, B Scherrer, B Macq, S K Warfield. Multi-Fascicle Model Reconstruction from Acquisitions of DWI at a Single B-Value with a Population-Informed Prior. ISMRM 2013. Abstract [PDF]

  63. B Scherrer, R O Suarez, S K Warfield. Automatic Delineation of White Matter Fascicles By Localization Based Upon Anatomical Spatial Relationships. ISBI 2103. Conference Proceeding. [PDF]

  64. B Scherrer, M Taquet, S K Warfield. Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error. IPMI 2013. [PDF]

  65. M Taquet, B Scherrer, N Boumal, B Macq, S K Warfield. Estimation of a Multi-Fascicle Model from Single B-Value Data with a Population-Informed Prior. MICCAI 2013; 16(Pt 3): 695-702. [PDF]

  66. J M Peters, M Taquet, A K Prohl, B Scherrer, A M van Eeghen, S P Prabhu, M Sahin, S K Warfield. Diffusion tensor imaging and related techniques in tuberous sclerosis complex: review and future directions. Future Neurol. 2013
    Sep;8(5):583-597. [WWW] [doi] [PDF] In press.

  67. D K Thompson, K J Lee, G F Egan, S K Warfield, L W Doyle, P J Anderson, T E Inder. Regional white matter microstructure in very preterm infants: Predictors and 7 year outcomes. Cortex. 2013 Dec 7. pii: S0010-9452(13)00285-2. [WWW] [doi] [PDF] In press.

  68. C Clouchoux, A J du Plessis, M Bouyssi-Kobar, W Tworetzky, D B McElhinney, D W Brown, A Gholipour, D Kudelski, S K Warfield, R J McCarter, R L Jr Robertson, A C Evans, J W Newburger, C Limperopoulos. Delayed cortical development in fetuses with complex congenital heart disease. Cereb Cortex. 2013 Dec;23(12):2932-43. [WWW] [doi: 10.1093/cercor/bhs281] [PDF] In press.

  69. W W Lewis, M Sahin, B Scherrer, J M Peters, R O Suarez, V K Vogel-Farley, SS Jeste, M C Gregas, S P Prabhu, C A 3rd Nelson, S K Warfield. Impaired language pathways in tuberous sclerosis complex patients with autism spectrum disorders. Cereb Cortex. 2013 Jul;23(7):1526-32. [WWW] [doi: 10.1093/cercor/bhs135] [PDF] In press.

  70. M C Liszewski, F W Hersman, T A Altes, Y Ohno, P Ciet, S K Warfield, E Y Lee. Magnetic resonance imaging of pediatric lung parenchyma, airways, vasculature, ventilation, and perfusion: state of the art. Radiol Clin North Am. 51(4):555-82, 2013. [WWW] [doi: 10.1016/j.rcl.2013.04.004] [PDF]

  71. A Suinesiaputra, B R Cowan, A O Al-Agamy, M A Elattar, N Ayache, A S Fahmy, A M Khalifa, P Medrano-Gracia,M P Jolly, A H Kadish, D C Lee, J Margeta, S K Warfield, A A Young. A collaborative resource to build consensus for automated left
    ventricular segmentation of cardiac MR images.
     Med Image Anal. 18(1):50-62, 2013. [www] [doi: 10.1016/j.media.2013.09.001] [PDF]

  72. V Taimouri, M Freiman, O Afacan, S K Warfield. Spatially Constrained Incoherent Motion (SCIM) Model Improves Quantitative Diffusion-Weighted MRI Analysis of Crohn's Disease Patients. Proc. of MICCAI 2013 Workshop on Computational and Clinical Applications in Abdominal Imaging, Lecture notes in Computer Science. 8198:11-19, 2013. [WWW] [PDF]

  73. M Freiman, O Afacan, R V Mulkern, S K Warfield. Improved multi b-value Diffusion-Weighted MRI of the body by Simultaneous Model Estimation and Image Reconstruction (SMEIR). Accepted to MICCAI 2013. [PDF]

  74. M Freiman, J M Perez-Rossello, M J Callahan, S D Voss, K Ecklund, R V Mulkern, S K Warfield. Reliable estimation of Incoherent Motion parametric maps from Diffusion-weighted MRI using fusion bootstrap moves. Medical Image Analysis, 17(3):325-336, 2013. [WWW] [doi: 10.1016/j.media.2012.12.001] [PDF]

  75. B Scherrer, A Gholipour, S K Warfield. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal., 2012, in press. [WWW] [doi: 10.1016/j.media.2012.05.003]

  76. W W Lewis, M Sahin, B Scherrer, J M Peters, R O Suarez, V K Vogel-Farley, S S Jeste, M C Gregas, S P Prabhu, C A Nelson, S K Warfield. Impaired Language Pathways in Tuberous Sclerosis Complex Patients with Autism Spectrum Disorders. Cereb Cortex. 2012, in press. [WWW] [doi: 10.1093/cercor/bhs135]

  77. M J Callahan, M Bittman, R V Mulkern, A Bousvaros, S K Warfield. Characterization of fast and slow diffusion from diffusion-weighted MRI of pediatric Crohn’s disease. Journal of Magnetic Resonance Imaging, 2012, in press. [PDF]

  78. M Freiman, S D Voss, R V Mulkern, J M Perez-Rossello, M J Callahan, S K Warfield. In-vivo assessment of optimal b-value range for perfusion-insensitive apparent diffusion coefficient imaging. Medical Physics, 39(8):4832-4839, 2012. [WWW] [doi: 10.1118/1.4736516] [PDF]

  79. D E Hyde, F H Duffy and S K Warfield. Anisotropic partial volume CSF modeling for EEG source localization. Neuroimage. 62(3): 2161-2170, 2012. [WWW] [doi: 10.1016/j.neuroimage.2012.05.055]

  80. M Freiman, S D Voss, R V Mulkern, J M Perez-Rossello, M J Callahan, S K Warfield. Reliable assessment of perfusivity and diffusivity from diffusion imaging of the body. Med Image Comput Comput Assist Interv., 2012, in press. [PDF]

  81. O Commowick, A Akhondi-Asl, S K Warfield. Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE. IEEE Trans Med Imaging, 2012, in press. [PDF]

  82. A Gholipour, A Akhondi-Asl, J A Estroff, S K Warfield. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage, 60(3):1819-31, 2012. [WWW] [doi: 10.1016/j.neuroimage.2012.01.128]

  83. H Als, F H Duffy, G McAnulty, S C Butler, L Lightbody, S Kosta, N I Weisenfeld, R Robertson, R B Parad, S A Ringer, J G Blickman, D Zurakowski, S K Warfield. NIDCAP improves brain function and structure in preterm infants with severe intrauterine growth restriction. J Perinatol., 2012, in press. [WWW] [doi: 10.1038/jp.2011.201] [PDF]

  84. L M Vigneron, L Noels, S K Warfield, J G Verly, P A Robe. Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Int J Biomed Imaging. 2012:872783, 2012. [WWW] [doi: 10.1155/2012/872783] [PDF]

  85. D K Thompson, Z M Ahmadzai, S J Wood, T E Inder, S K Warfield, L W Doyle, G F Egan. Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing. Neuroinformatics, 10(2):173-80, 2012. [WWW] [doi: 10.1007/s12021-011-9137-7]

  86. D K Thompson, T E Inder, N Faggian, S K Warfield, P J Anderson, L W Doyle, G F Egan. Corpus callosum alterations in very preterm infants: Perinatal correlates and 2-year neurodevelopmental outcomes. Neuroimage, 59(4):3571-81, 2012. [WWW] [doi: 10.1016/j.neuroimage.2011.11.057]

  87. R O Suarez, O Commowick, S P Prabhu, S K Warfield. Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. Neuroimage, 59(4):3690-700, 2012. [WWW] [doi: 10.1016/j.neuroimage.2011.11.043] [PDF]

  88. A Akhondi-asl, A Hans, B Scherrer, J M Peters and S K Warfield. Whole brain group network analysis using network bias and variance parameters. ISBI 2012, in press. [PDF]

  89. X Tomas-Fernandez and S K Warfield. Population intensity outliers or a new model for brain WM abnormalities. ISBI 2012, in press. [PDF]

  90. M Taquet, B Macq, S K Warfield. A Generalized Correlation Coefficient: Application to DTI and Multi-Fiber DTI. MMBIA 2012, pp. 9-14. [PDF]

  91. J M Peters, M Sahin, V K Vogel-Farley, S S Jeste, C A Nelson 3rd, M C Gregas, S P Prabhu, B Scherrer, S K Warfield. Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex. Acad Radiol. 19(1):17-25, 2012. [WWW] [doi: 10.1016/j.acra.2011.08.016] [PDF]

  92. C Clouchoux, D Kudelski, A Gholipour, S K Warfield, S Viseur, M Bouyssi-Kobar, J L Mari, A C Evans, A J du Plessis, C Limperopoulos. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct.,217(1):127-39, 2012. [WWW] [doi: 10.1007/s00429-011-0325-x] [PDF]

  93. P Wintermark, A Hansen, M C Gregas, J Soul, M Labrecque, R L Robertson, S K Warfield. Brain perfusion in asphyxiated newborns treated with therapeutic hypothermia. AJNR Am J Neuroradiol. 32(11):2023-9, 2011. [WWW] [doi: 10.3174/ajnr.A2708]

  94. L M Vigneron, S K Warfield, P A Robe, J G Verly. 3D XFEM-based modeling of retraction for preoperative image update. Comput Aided Surg., 16(3):121-34, 2011. [WWW] [doi: 10.3109/10929088.2011.570090]

  95. A Akselrod-Ballin, D Bock, R C Reid, S K Warfield. Accelerating image registration with the johnson-lindenstrauss lemma: application to imaging 3-d neural ultrastructure with electron microscopy. IEEE Trans Med Imaging, 30(7): 1427-38, 2011. [WWW] [doi: 10.1109/TMI.2011.2125797]

  96. N I Weisenfeld and S K Warfield. Learning Likelihoods for Labeling (L3): A General Multi-Classifier Segmentation Algorithm. Med Image Comput Comput Assist Interv., 14(Pt 3):322-329, 2011. [PDF] [WWW]

  97. M Freiman, S D Voss, R V Mulkern, J M Perez-Rossello and S K Warfield. Quantitative Body DW-MRI Biomarkers Uncertainty Estimation Using Unscented Wild-Bootstrap. Med Image Comput Comput Assist Interv., 14(Pt 2):74-81, 2011. [WWW] [PDF]

  98. B Scherrer and S K Warfield. Super resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv., 14(Pt 2):124-132, 2011. [WWW] [PDF]

  99. M Taquet, B Macq and S K Warfield. Spatially adaptive log-Euclidean polyaffine registration based on sparse matches. Med Image Comput Comput Assist Interv., 14(Pt 2):590-597, 2011. [WWW] [PDF]

  100. M Freiman, S Voss, S K Warfield. Demons registration with local affine adaptive regularization: application to registration of abdominal structures. ISBI 2011, pp. 1219-1222. [PDF]

  101. B Scherrer and S K Warfield. Toward an accurate multi-fiber assessment strategy for clinical practice. ISBI 2011, pp. 2140-2143. [PDF]

  102. X Tomas-Fernandez and S K Warfield. A new classifier feature space for an improved multiple sclerosis lesion segmentation. ISBI 2011, pp. 1492-1495. [PDF]

  103. D E Hyde and S K Warfield. Anisotropic Equivalent Conductivity Tensors for Bioelectric Modeling of Partial Volume Effects in Cerebrospinal Fluid Space. ISBI 2011, pp. 1109-1112. [PDF]

  104. N I Weisenfeld and S K Warfield. Soft STAPLE: Truth and Performance Level Estimation From Probabilistic Segmentations. ISBI 2011, pp. 441-446.

  105. A Akhondi-asl and S K Warfield. Cortical brain structures segmentation using constrained optimization and intensity coupling. ISBI 2011, pp. 2022-2025. [PDF]

  106. A Gholipour, M Polak, A van der Kouwe, E Nevo, S K Warfield. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Conf Proc IEEE Eng Med Biol Soc., 2011:5722-5, 2011. [WWW] [doi: 10.1109/IEMBS.2011.6091385] [PDF]

  107. A Gholipour, N Kehtarnavaz, B Scherrer, S K Warfield. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc., 2011:6997-7000, 2011. [WWW] [doi: 10.1109/IEMBS.2011.6091769] [PDF]

  108. A Gholipour, J A Estroff, C E Barnewolt, S A Connolly, S K Warfield. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Computer Assisted Radiology and Surgery, 6(3): 329-39, 2011. [WWW] [doi: 10.1007/s11548-010-0512-x] [PDF]

  109. D K Thompson, T E Inder, N Faggian, L Johnston, S K Warfield, P J Anderson, L W Doyle, G F Egan. Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. Neuroimage, 15; 55(2): 479-90 2011. [WWW] [doi: 10.1016/j.neuroimage.2010.12.025]

  110. L Hoyte, W Ye, L Brubaker, J R Fielding, M E Lockhart, M E Heilbrun, M B Brown, S K Warfield, Pelvic Floor Disorders Network. Segmentations of MRI images of the female pelvic floor: a study of inter- and intra-reader reliability. J Magn Reson Imaging, 33(3): 684-91, 2011. [WWW] [doi: 10.1002/jmri.22478]

  111. P Wintermark, A Hansen, J Soul, M Labrecque, R L Robertson, S K Warfield. Early versus late MRI in asphyxiated newborns treated with hypothermia. Arch Dis Child Fetal Neonatal Ed., 96(1): F36-44 2011. [WWW] [doi: 10.1136/adc.2010.184291]

  112. P Wintermark, M Labrecque, S K Warfield, S Dehart, A Hansen. Can induced hypothermia be assured during brain MRI in neonates with hypoxic-ischemic encephalopathy? Pediatr Radiol., 40(12): 1950-4 2010. [WWW] [doi: 10.1007/s00247-010-1816-2] [PDF]

  113. A Wittek, G Joldes, M Couton, S K Warfield, K Miller. Patient-specific non-linear finite element modelling for predicting soft organ deformation in real-time: application to non-rigid neuroimage registration. Prog Biophys Mol Biol, 103(2-3): 292-303 2010. [WWW] [doi: 10.1016/j.pbiomolbio.2010.09.001]

  114. A Gholipour, J A Estroff, M Sahin, S P Prabhu, S K Warfield. Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. Med Image Comput Comput Assist Interv., 13(Pt 2):109-16 2010. [WWW] [PDF]

  115. O Commowick and S K Warfield. Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE. Med Image Comput Comput Assist Interv., 13(Pt 3): 25-32 2010. [WWW] [PDF]

  116. A Gholipour, J A Estroff, S K Warfield. Robust Super-resolution Volume Reconstruction from Slice Acquisitions: Application to Fetal Brain MRI. IEEE Trans Med Imaging., 29(10):1739-58 2010. [WWW] [doi: 10.1109/TMI.2010.2051680] [PDF]

  117. O Commowick and S K Warfield. Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from STAPLE. IEEE Trans Med Imaging, 29(3):771-80 2010. [WWW] [doi: 10.1109/TMI.2009.2036011] [PDF]

  118. B Scherrer and S K Warfield. Why Multiple B-Values are Required for Multi-Tensor Models. Evaluation with a Constrained Log-Euclidean Model. ISBI 2010, pp. 1389-92. [PDF]

  119. B Scherrer and S K Warfield. Optimal HARDI acquisition schemes for multi-tensor models. In: International Symposium on Magnetic Resonance in Medicine (ISMRM) 2010, Stockholm, Sweden. [PDF]

  120. J W Lee, P Y Wen, S Hurwitz, P Black, S Kesari, J Drappatz, A J Golby, W M Wells, S K Warfield, R Kikinis, E B Bromfield. Morphological characteristics of brain tumors causing seizures. Arch Neurol., 67(3):336-42 2010. [WWW] [doi: 10.1001/archneurol.2010.2]

  121. M Krishnan, O Commowick, S S Jeste, N Weisenfeld, A Hans, M Gregas, M Sahin, and S K Warfield. Diffusion features of white matter in Tuberous Sclerosis Complex assessed with tractography. Pediatric Neurology, 42(2):101-6 2010. [WWW] [doi: 10.1016/j.pediatrneurol.2009.08.001] [PDF]

  122. J Fripp, S Crozier, S K Warfield, and S Ourselin. Automatic segmentation and quantitative analysis of the articular cartilages from magnetic resonance images of the knee. IEEE Trans Med Imagine, 29(1): 55-64 2010. [WWW] [doi: 10.1109/TMI.2009.2024743]

  123. P Wintermark, T Boyd, M M Parast, L J Van Marter, S K Warfield, R L Robertson, and S A Ringer. Fetal Placental Thrombosis and Neonatal Implications. Am J Perinatol. 27(3):251-6 2010. [WWW] [doi : 10.1055/s-0029-1239486] [PDF]

  124. L M Vigneron, R C Boman, J-P Ponthot, P A Robe, S K Warfield and J G Verly. Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery. Journal of Computational and Applied Mathematics. 2009, in press.

  125. N I Weisenfeld and S K Warfield. A data-driven approach to discovering common brain anatomy. In: Biomedical Imaging: From Nano to Macro, 2009 (ISBI 2009), pages 217-220 2009. [PDF]

  126. A Akselrod-Ballin, D Bock, R C Reid, and S K Warfield. Improved registration for large electron microscopy images. In: Biomedical Imaging: From Nano to Macro, 2009 (ISBI 2009), pages 434-437, 2009. [PDF]

  127. O Commowick, S K Warfield and G Malandain. Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. Med Image Comput Comput Assist Interv., 12(Pt 2):993-1000 2009. [PDF]

  128. A Akselrod-Ballin, D Bock, R C Reid and S K Warfield. Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma. Med Image Comput Comput Assist Interv., 12(Pt 1):632-9 2009. [PDF]

  129. G R Joldes, A Wittek, M Couton, S K Warfield and K Miller. Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms. Med Image Comput Comput Assist Interv., 12(Pt 2):300-7 2009. [PDF]

  130. A Gholipour and S K Warfield. Super-resolution reconstruction of fetal brain MRI. In:MICCAI Workshop on Image Analysis for the Developing Brain (IADB'2009), C. Studholme and F. Rousseau, Eds., London, UK, 24 Sept. 2009, pp. 45-52. [PDF]

  131. O Commowick and S K Warfield. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. Inf Process Med Imaging., 21:701-12 2009. [WWW]

  132. M Schaap, C T Metz, T van Walsum, A G van der Giessen, A C Weustink, N R Mollet, C Bauer, H Bogunovic, C Castro, X Deng, E Dikici, T O'Donnell, M Frenay, O Friman, M Hernández Hoyos, P H Kitslaar, K Krissian, C Kühnel, M A Luengo-Oroz, M Orkisz, O Smedby, M Styner, A Szymczak, H Tek, C Wang, S K Warfield, S Zambal, Y Zhang, G P Krestin, and W J Niessen. Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Med Image Anal., 13(5):701-14 2009. [WWW] [doi: 10.1016/j.media.2009.06.003]

  133. L M Vigneron, M P Duflot, P A Robe, S K Warfield, and J G Verly . 2D XFEM-based modeling of retraction and successive resections for preoperative image update. Comput Aided Surg., Jul 27:1-20 2009. [WWW] [doi: 10.1080/10929080903052677]

  134. J N L Benders, F Groenendaal, F van Bel, R Ha Vinh, J Dubois, J F Lazeyras, S K Warfield, P S Huppi, and L S de Vries. Brain development of the preterm neonate after neonatal hydrocortisone treatment for chronic lung disease Pediatric Research 66(5):555-9 2009. [WWW] [doi: 10.1203/PDR.0b013e3181b3aec5]

  135. N I Weisenfeld and S K Warfield. Automatic Segmentation of Newborn Brain MRI. Neuroimage, 47(2):564-72 August 2009. [WWW] [doi: 10.1016/j.neuroimage.2009.04.068] [PDF]

  136. O Commowick and S K Warfield. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis. IEEE TMI, 28(6):838-846 2009. [WWW] [doi: 10.1109/TMI.2008.2010438] [PDF]

  137. M Rullmann, A Anwander, M Dannhauer, S K Warfield, F H Duffy, and CH Wolters. EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. Neuroimage, 44(2):399-410 2009. [WWW] [doi:10.1016/j.neuroimage.2008.09.009] [PDF]

  138. D K Thompson, S J Wood, L W Doyle, S K Warfield, G F Egan, and T E Inder MR-determined hippocampal asymmetry in full-term and pre-term neonates. Hippocampus 19(2):118-23 2009. [WWW] [doi: 10.1002/hipo.20492] [PDF]


  139. M S De Craene, B Macq, F Marques, P Salembier, and S K Warfield. Unbiased Group-wise Alignment by Iterative Central Tendency Estimation. Math. Model. Nat. Phenom., 3(6):2-32 2008. [PDF]


  140. Ž Špiclin, A Hans, F H Duffy, S K Warfield, B Likar, and F Pernus. EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 11(Pt 1):762-70, 2008. [WWW] [PDF]


  141. O Commowick, P Fillard, O Clatz, and S K Warfield. Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients.Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 11(Pt 1):975-82, 2008. [WWW] [PDF]


  142. S K Warfield, K H Zou, and W M Wells. Validation of image segmentation by estimating rater bias and variance. Phil. Trans. R. Soc. A, 366(1874):2361-75, April 2008. [WWW] [doi: 10.1098/rsta.2008.0040] [PDF]


  143. D K Thompson, S J Wood, L W Doyle, S K Warfield, G A Lodygensky, P J Anderson, G F Egan, and T E Inder. Neonate Hippocampal Volumes: Prematurity, Perinatal Predictors, and 2-Year Outcome. Annals of Neurology, 63(5):642-51, April 2008. [WWW][doi: 10.1002/ana.21367] [PDF]


  144. G A Lodygensky, M L Seghier, S K Warfield, C B Tolsa, S Sizonenko, F Lazeyras, and P S Huppi. Intrauterine Growth Restriction Affects the Preterm Infant's Hippocampus. Pediatr Res, 63(4):438-443, April 2008. [WWW] [doi: 10.1203/PDR.0b013e318165c005] [PDF]


  145. M J Rivkin, P E Davis, J L Lemaster, H J Cabral, S K Warfield, R V Mulkern, C D Robson, R Rose-Jacobs, and D A Frank Volumetric MRI study of brain in children with intrauterine exposure to cocaine, alcohol, tobacco, and marijuana. Pediatrics., 121(4): 741-50, April 2008. [WWW] [doi: 10.1542/peds.2007-1399] [PDF]


  146. M Maddah, W E Grimson, S K Warfield and W M Wells. A unified framework for clustering and quantitative analysis of white matter fiber tracts. Med Image Anal,12(2):191-202, April 2008. [WWW] [doi: 10.1016/j.media.2007.10.003] [PDF]


  147. J Dubois, M Benders, C Borradori-Tolsa, A Cachia, F Lazeyras, R Ha-Vinh Leuchter, S V Sizonenko, S K Warfield, J F Mangin, and P S Hüppi. Primary cortical folding in the human newborn: an early marker of later functional development. Brain, 131:2028-2041, August 2008. [WWW] [doi: 10.1093/brain/awn137] [PDF]


  148. L Hoyte, M S Damaser, S K Warfield, G Chukkapalli, A Majumdar, D J Choi, A Trivedi, and P Krysl. Quantity and distribution of levator ani stretch during simulated vaginal childbirth. Am J Obstet Gynecol, 199(2):198.e1-198.e5, August 2008. [WWW] [doi: 10.1016/j.ajog.2008.04.027] [PDF]


  149. J J Wisco, D L Rosene, R J Killiany, M B Moss, S K Warfield, S Egorova, Y Wu, Z Liptak, J Warner, and C R Guttmann. A rhesus monkey reference label atlas for template driven segmentation. J Med Primatol, 37(5):250-60, October 2008. [WWW] [doi: 10.1111/j.1600-0684.2008.00288.x] [PDF]


  150. J J Wisco, R J Killiany, C R Guttmann, S K Warfield, M B Moss, and D L Rosene. An MRI study of age-related white and gray matter volume changes in the rhesus monkey. Neurobiol Aging, 29(10):1563-75, Oct 2008. [WWW] [doi: 10.1016/j.neurobiolaging.2007.03.022] [PDF]


  151. N Archip, O Clatz, S Whalen, S P Dimaio, P M Black, F A Jolesz, A Golby, and S K Warfield. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery. Neurosurgery, 62(3 Suppl 1):209-15; discussion 215-6, March 2008. [WWW] [doi: 10.1227/01.neu.0000317395.08466.e6] [PDF]


  152. A Wittek, K Miller, R Kikinis, and S K Warfield. Patient-specific model of brain deformation: Application to medical image registration. J Biomech, 40(4): 919-29 2007. [WWW] [doi:10.1016/j.jbiomech.2006.02.021]


  153. D K Thompson, S K Warfield, J B Carlin, M Pavlovic, H X Wang, M Bear, M J Kean, L W Doyle, G F Egan, and T E Inder. Perinatal risk factors altering regional brain structure in the preterm infant. Brain, 130(Pt 3): 667-77 March 2007. [WWW] [doi:10.1093/brain/awl277]


  154. M Maddah, W M Wells, S K Warfield, C F Westin, and W E Grimson Probabilistic clustering and quantitative analysis of white matter fiber tracts. Inf Process Med Imaging, 20: 372-83 2007. [WWW]


  155. J Fripp, S Crozier, S K Warfield, and S Ourselin Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Phys Med Biol, 52(6): 1617-31, March 2007. [WWW] [doi: 10.1088/0031-9155/52/6/005]


  156. N Archip, O Clatz, S Whalen, D Kacher, A Fedorov, A Kot, N Chrisochoides, F Jolesz, A Golby, P M Black, and S K Warfield. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage, 35(2): 609-24, April 2007. [WWW] [doi: 10.1016/j.neuroimage.2006.11.060] [PDF]

  157. S Alayon, R Robertson, S K Warfield and J Ruiz-Alzola. A fuzzy system for helping medical diagnosis of malformations of cortical development. Biomed Inform, 40(3):221-35, June 2007. [WWW] [doi: 10.1016/j.jbi.2006.11.002]


  158. A U Mewes, L Zollei, P S Huppi, H Als, G B McAnulty, T E Inder, W M Wells, and S K Warfield. Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. Neuroimage, 15;36(4):1074-85, July 2007. [WWW] [doi: 10.1016/j.neuroimage.2007.04.011]


  159. J Dauguet, S Peled, V Berezovskii, T Delzescaux, S K Warfield, R Born and C F Westin. Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. Neuroimage, 37(2):530-8, August 2007. [WWW] [doi: 10.1016/j.neuroimage.2007.04.067]


  160. N Archip, F A Jolesz, and S K Warfield. A validation framework for brain tumor segmentation. Acad Radiol, 14(10):1242-51, October 2007. [WWW] [doi: 10.1016/j.acra.2007.05.025]


  161. K T Downing, L P Hoyte, S K Warfield, and A C Weidner. Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping. Am J Obstet Gynecol, 197(6):625.e1-4, December 2007. [WWW] [doi: 10.1016/j.ajog.2007.08.015 ]


  162. N Archip, S Tatli, P Morrison, F Jolesz, S K Warfield, and S Silverman. Non-rigid registration of pre-procedural MR images with intra-procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 10(Pt 2): 969-77, 2007. [WWW]


  163. J Dauguet, D Bock, R C Reid, and S K Warfield. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 10(Pt 2): 710-7, 2007. [WWW]


  164. J Fripp, S Crozier, S K Warfield, and S Ourselin. Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 10(Pt 2): 186-94, 2007. [WWW]


  165. S P Dimaio, N Archip, N Hata, I F Talos, S K Warfield, A Majumdar, N Mcdannold, K Hynynen, P R Morrison, W M Wells, D F Kacher, R E Ellis, A J Golby, P M Black, F A Jolesz, and R Kikinis. Image-guided neurosurgery at Brigham and Women's Hospital. IEEE Eng Med Biol Mag, 25(5):67-73, Sep-Oct 2006. [WWW]


  166. A Fedorov, N Chrisochoides, R Kikinis, and S K Warfield. An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006, 1:658-661, 2006. [PDF]

  167. D Goldberg-Zimring and S K Warfield. Novel image processing techniques to better understand white matter disruption in multiple sclerosis. Autoimmun Rev, 5(8):544-548, October 2006. [WWW] [doi:10.1016/j.autrev.2006.06.003]


  168. P Jannin, E Krupinski, and S K Warfield. Validation in medical image processing. IEEE Trans Med Imaging, 25(11):1405-1409, November 2006. [WWW]


  169. A U Mewes, P S Hueppi, H Als, F J Rybicki, T E Inder, G B McAnulty, R V Mulkern, R L Robertson, M J Rivkin, and S K Warfield. Regional brain development in serial magnetic resonance imaging of low-risk preterm infants. Pediatrics, 118(1):23-33, July 2006. [WWW] [doi:10.1542/peds.2005-2675]


  170. D K Shah, P J Anderson, J B Carlin, M Pavlovic, K Howard, D K Thompson, S K Warfield, and T E Inder. Reduction in cerebellar volumes in preterm infants: relationship to white matter injury and neurodevelopment at two years of age. Pediatr Res, 60(1):97-102, July 2006. [WWW] [doi:10.1203/01.pdr.0000220324.27597.f0]


  171. D K Shah, C Guinane, P August, N C Austin, L J Woodward, D K Thompson, S K Warfield, R Clemett, and T E Inder. Reduced occipital regional volumes at term predict impaired visual function in early childhood in very low birth weight infants. Invest Ophthalmol Vis Sci, 47(8):3366-3373, August 2006. [WWW] [doi:10.1167/iovs.05-0811]


  172. Y Wu, S K Warfield, I L Tan, W M Wells, D S Meier, R A van Schijndel, F Barkhof, and C R Guttmann. Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. Neuroimage, 32(3):1205-1215, September 2006. [WWW] [doi:10.1016/j.neuroimage.2006.04.211]


  173. N I Weisenfeld, A U Mewes, and S K Warfield. Highly accurate segmentation of brain tissue and subcortical gray matter from newborn MRI. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 9(Pt 1): 199-206, 2006. [WWW] [PDF]


  174. J Dauguet, S Peled, V Berezovskii, T Delzescaux, S K Warfield, R Born, and C F Westin. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 9(Pt 1): 109-16, 2006. [WWW]


  175. S K Warfield, K H Zou, and W M Wells. Validation of image segmentation by estimating rater bias and variance. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 9(Pt 2): 839-47, 2006. [WWW] [PDF]


  176. N Archip, R Rohling, P Cooperberg, H Tahmasebpour, and S K Warfield. Spectral clustering algorithms for ultrasound image segmentation. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 2):862-869, 2005. [WWW]


  177. O Clatz, H Delingette, I F Talos, A J Golby, R Kikinis, F A Jolesz, N Ayache, and S K Warfield. Hybrid formulation of the model-based non-rigid registration problem to improve accuracy and robustness. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 2):295-302, 2005. [WWW]


  178. O Clatz, H Delingette, I F Talos, A J Golby, R Kikinis, F A Jolesz, N Ayache, and S K Warfield. Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans Med Imaging, 24(11):1417-1427, November 2005. [WWW] [PDF]


  179. O Clatz, M Sermesant, P Y Bondiau, H Delingette, S K Warfield, G Malandain, and N Ayache. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans Med Imaging, 24(10):1334-1346, October 2005. [WWW]


  180. D Goldberg-Zimring, A U Mewes, M Maddah, and S K Warfield. Diffusion tensor magnetic resonance imaging in multiple sclerosis. J Neuroimaging, 15(4 Suppl):-81, 2005. [WWW] [doi:10.1177/1051228405283363] [PDF]


  181. H Haidar, S K Warfield, and J S Soul. Talairach-based parcellation of neonatal brain magnetic resonance imaging data: validation of a new approach. J Neuroimaging, 15(4):305-314, October 2005. [WWW] [doi:10.1177/1051228405279041]


  182. S Haker, W M Wells, S K Warfield, I F Talos, J G Bhagwat, D Goldberg-Zimring, A Mian, L Ohno-Machado, and K H Zou. Combining classifiers using their receiver operating characteristics and maximum likelihood estimation. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 1):506-514, 2005. [WWW]


  183. T E Inder, S K Warfield, H Wang, P S Hüppi, and J J Volpe. Abnormal cerebral structure is present at term in premature infants. Pediatrics, 115(2):286-294, February 2005. [WWW] [doi:10.1542/peds.2004-0326]


  184. C Limperopoulos, J S Soul, K Gauvreau, P S Huppi, S K Warfield, H Bassan, R L Robertson, J J Volpe, and A J du Plessis. Late gestation cerebellar growth is rapid and impeded by premature birth. Pediatrics, 115(3):688-695, March 2005. [WWW] [doi:10.1542/peds.2004-1169]


  185. C Limperopoulos, J S Soul, H Haidar, P S Huppi, H Bassan, S K Warfield, R L Robertson, M Moore, P Akins, J J Volpe, and A J du Plessis. Impaired trophic interactions between the cerebellum and the cerebrum among preterm infants. Pediatrics, 116(4):844-850, October 2005. [WWW] [doi:10.1542/peds.2004-2282]


  186. M Maddah, A U Mewes, S Haker, W E Grimson, and S K Warfield. Automated atlas-based clustering of white matter fiber tracts from DTMRI. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 1):188-195, 2005. [WWW]


  187. A Tsai, W M Wells, S K Warfield, and A S Willsky. An EM algorithm for shape classification based on level sets. Med Image Anal, 9(5):491-502, October 2005. [WWW] [doi:10.1016/j.media.2005.05.001]


  188. J F Verhey, J Wisser, S K Warfield, J Rexilius, and R Kikinis. Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model. Biomed Eng Online, 4(1):19-19, 2005. [WWW] [doi:10.1186/1475-925X-4-19]


  189. S K Warfield, S J Haker, I F Talos, C A Kemper, N Weisenfeld, A U Mewes, D Goldberg-Zimring, K H Zou, C F Westin, W M Wells, C M Tempany, A Golby, P M Black, F A Jolesz, and R Kikinis. Capturing intraoperative deformations: research experience at Brigham and Women's Hospital. Med Image Anal, 9(2):145-162, April 2005. [WWW] [doi:10.1016/j.media.2004.11.005]


  190. L C Wiegand, S K Warfield, J J Levitt, Y Hirayasu, D F Salisbury, S Heckers, S Bouix, D Schwartz, M Spencer, C C Dickey, R Kikinis, F A Jolesz, R W McCarley, and M E Shenton. An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis. Am J Psychiatry, 162(1):65-70, January 2005. [WWW] [doi:10.1176/appi.ajp.162.1.65]


  191. A Wittek, R Kikinis, S K Warfield, and K Miller. Brain shift computation using a fully nonlinear biomechanical model. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 2):583-590, 2005. [WWW]


  192. L Wolfson, X Wei, C B Hall, V Panzer, D Wakefield, R R Benson, J A Schmidt, S K Warfield, and C R Guttmann. Accrual of MRI white matter abnormalities in elderly with normal and impaired mobility. J Neurol Sci, 232(1-2):23-27, May 2005. [WWW] [doi:10.1016/j.jns.2004.12.017]


  193. K H Zou, D N Greve, M Wang, S D Pieper, S K Warfield, N S White, S Manandhar, G G Brown, M G Vangel, R Kikinis, and W M Wells. Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology, 237(3):781-789, December 2005. [WWW] [doi:10.1148/radiol.2373041630]


  194. K H Zou, K Tuncali, S K Warfield, C P Zentai, D Worku, P R Morrison, and S G Silverman. Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations: the value of supervised learning. Acad Radiol, 12(4):444-450, April 2005. [WWW] [doi:10.1016/j.acra.2004.11.029]


  195. A du Bois d'Aische, M D Craene, X Geets, V Gregoire, B Macq, and S K Warfield. Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Med Image Anal, 9(6):538-546, December 2005. [WWW] [doi:10.1016/j.media.2005.04.003]


  196. H Als, F H Duffy, G B McAnulty, M J Rivkin, S Vajapeyam, R V Mulkern, S K Warfield, P S Huppi, S C Butler, N Conneman, C Fischer, and E C Eichenwald. Early experience alters brain function and structure. Pediatrics, 113(4):846-857, April 2004. [WWW]


  197. N G Anderson, S K Warfield, S Wells, C Spencer, A Balasingham, J J Volpe, and T E Inder. A limited range of measures of 2-D ultrasound correlate with 3-D MRI cerebral volumes in the premature infant at term. Ultrasound Med Biol, 30(1):11-18, January 2004. [WWW] [doi:10.1016/j.ultrasmedbio.2003.10.001]


  198. D Goldberg-Zimring, A Achiron, S K Warfield, C R Guttmann, and H Azhari. Application of spherical harmonics derived space rotation invariant indices to the analysis of multiple sclerosis lesions' geometry by MRI. Magn Reson Imaging, 22(6):815-825, July 2004. [WWW] [doi:10.1016/j.mri.2004.01.053]


  199. L Hoyte, M Jakab, S K Warfield, S Shott, G Flesh, and J R Fielding. Levator ani thickness variations in symptomatic and asymptomatic women using magnetic resonance-based 3-dimensional color mapping. Am J Obstet Gynecol, 191(3):856-861, September 2004. [WWW] [doi:10.1016/j.ajog.2004.06.067]


  200. S G Silverman, M R Sun, K Tuncali, P R Morrison, E vanSonnenberg, S Shankar, K H Zou, and S K Warfield. Three-dimensional assessment of MRI-guided percutaneous cryotherapy of liver metastases. AJR Am J Roentgenol, 183(3):707-712, September 2004. [WWW]


  201. C B Tolsa, S Zimine, S K Warfield, M Freschi, A Sancho Rossignol, F Lazeyras, S Hanquinet, M Pfizenmaier, and P S Huppi. Early alteration of structural and functional brain development in premature infants born with intrauterine growth restriction. Pediatr Res, 56(1):132-138, July 2004. [WWW] [doi:10.1203/01.PDR.0000128983.54614.7E]


  202. S K Warfield, K H Zou, and W M Wells. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging, 23(7):903-921, July 2004. [WWW] [PDF]


  203. X Wei, C R Guttmann, S K Warfield, M Eliasziw, and J R Mitchell. Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed?. Mult Scler, 10(4):402-406, August 2004. [WWW] [PDF]


  204. L C Wiegand, S K Warfield, J J Levitt, Y Hirayasu, D F Salisbury, S Heckers, C C Dickey, R Kikinis, F A Jolesz, R W McCarley, and M E Shenton. Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study. Biol Psychiatry, 55(2):131-140, January 2004. [WWW] [PDF]


  205. K H Zou, S K Warfield, A Bharatha, C M Tempany, M R Kaus, S J Haker, W M Wells, F A Jolesz, and R Kikinis. Statistical validation of image segmentation quality based on a spatial overlap index. Acad Radiol, 11(2):178-189, February 2004. [WWW]


  206. K H Zou, W M Wells, R Kikinis, and S K Warfield. Three validation metrics for automated probabilistic image segmentation of brain tumours. Stat Med, 23(8):1259-1282, April 2004. [WWW] [doi:10.1002/sim.1723]


  207. V Grau, A U Mewes, M Alcaniz, R Kikinis, and S K Warfield Improved watershed transform for medical image segmentation using prior information. IEEE Trans Med Imaging., 23(4): 447-58, April 2004. [WWW] [PDF]


  208. S Jaume, M Ferrant, B Macq, L Hoyte, J R Fielding, A Schreyer, R Kikinis, and S K Warfield. Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans Biomed Eng, 50(3):383-390, March 2003. [WWW] [doi: 10.1109/TBME.2003.808828]


  209. K H Zou, S K Warfield, J R Fielding, C M Tempany, M W William, M R Kaus, F A Jolesz, and R Kikinis. Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data. Acad Radiol, 10(12):1359-1368, December 2003. [WWW]


  210. R W Hunt, S K Warfield, H Wang, M Kean, J J Volpe, and T E Inder Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant. J Neurol Neurosurg Psychiatry, 74(5):658-60, May 2003. [WWW]


  211. M Ferrant, A Nabavi, B Macq, P M Black, F A Jolesz, R Kikinis, and S K Warfield. Serial registration of intraoperative MR images of the brain. Med Image Anal, 6(4):337-359, December 2002. [WWW] [PDF]


  212. J R Fielding, L X Hoyte, S A Okon, A Schreyer, J Lee, K H Zou, S K Warfield, J P Richie, K R Loughlin, M P O'Leary, C J Doyle, and R Kikinis. Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness. J Urol, 167(2 Pt 1):559-562, February 2002. [WWW]


  213. M Hirose, A Bharatha, N Hata, K H Zou, S K Warfield, R A Cormack, A D'Amico, R Kikinis, F A Jolesz, and C M Tempany. Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy. Acad Radiol, 9(8):906-912, August 2002. [WWW]


  214. J Ruiz-Alzola, C F Westin, S K Warfield, C Alberola, S Maier, and R Kikinis Nonrigid registration of 3D tensor medical data. Med Image Anal., 6(2): 143-61, June 2002. [WWW]


  215. X Wei, S K Warfield, K H Zou, Y Wu, X Li, A Guimond, J P Mugler, R R Benson, L Wolfson, H L Weiner, and C R Guttmann. Quantitative analysis of MRI signal abnormalities of brain white matter with high reproducibility and accuracy. J Magn Reson Imaging, 15(2):203-209, February 2002. [WWW]


  216. R R Benson, C R Guttmann, X Wei, S K Warfield, C Hall, J A Schmidt, R Kikinis, L I Wolfson Older people with impaired mobility have specific loci of periventricular abnormality on MRI. Neurology, 58(1): 48-55, January 2002. [WWW]


  217. M Ferrant, A Nabavi, B Macq, F A Jolesz, R Kikinis, and S K Warfield. Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model.IEEE Trans Med Imaging, 20(12):1384-97, December 2001. [WWW] [doi: 10.1109/42.974933]


  218. A Bharatha, M Hirose, N Hata, S K Warfield, M Ferrant, K H Zou, E Suarez-Santana, J Ruiz-Alzola, A D'Amico, R A Cormack, R Kikinis, F A Jolesz, and C M Tempany. Evaluation of three-dimensional finite element-based deformable registration of pre- and intraoperative prostate imaging. Med Phys., 28(12): 2551-60 , December 2001. [WWW]


  219. A Nabavi, P M Black, D T Gering, C F Westin, V Mehta, R S Pergolizzi, M Ferrant, S K Warfield, N Hata, R B Schwartz, W M Wells, R Kikinis, and F A Jolesz. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery, 48(4): 787-97; discussion 797-8, April 2001. [WWW]


  220. M R Kaus, S K Warfield, A Nabavi, P M Black, F A Jolesz, and R Kikinis. Automated segmentation of MR images of brain tumors. Radiology, 218(2): 586-91 February 2001. [WWW]


  221. R A Sperling, C R Guttmann, M J Hohol, S K Warfield, M Jakab, M Parente, E L Diamond, K R Daffner, M J Olek, E J Orav, R Kikinis, F A Jolesz, and H L Weiner. Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study. Arch Neurol., 58(1): 115-21, January 2001. [WWW]


  222. N Hata, A Nabavi, W M Wells, S K Warfield, R Kikinis, P M Black, and F A Jolesz. Three-dimensional optical flow method for measurement of volumetric brain deformation from intraoperative MR images. J Comput Assist Tomogr., 24(4): 531-8 July - August 2000. [WWW]


  223. A G Schreyer, J R Fielding, S K Warfield, J H Lee, K R Loughlin, H Dumanli, F A Jolesz, and R Kikinis R. Virtual CT cystoscopy: color mapping of bladder wall thickness. Invest Radiol., 35(5): 331-4, May 2000. [WWW]


  224. S K Warfield, R V Mulkern, C S Winalski, F A Jolesz, and R Kikinis. An image processing strategy for the quantification and visualization of exercise-induced muscle MRI signal enhancement. J Magn Reson Imaging, 11(5): 525-31 May 2000 [WWW]


  225. C R Guttmann, R Benson, S K Warfield, X Wei, M C Anderson, C B Hall, K Abu-Hasaballah, J P Mugler, and L Wolfson. White matter abnormalities in mobility-impaired older persons. Neurology, 54(6): 1277-83, March 2000. [WWW]


  226. S K Warfield, M Kaus, F A Jolesz, and R Kikinis. Adaptive, template moderated, spatially varying statistical classification. Med Image Anal., 4(1): 43-55, March 2000. [WWW] [PDF]


  227. T E Inder, P S Huppi, S Warfield, R Kikinis, G P Zientara, P D Barnes, F Jolesz, and J J Volpe. Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term. Ann Neurol., 46(5): 755-60, November 1999. [WWW]

  228. C R Guttmann, R Kikinis, M C Anderson, M Jakab, S K Warfield, R J Killiany, H L Weiner, and F A Jolesz. Quantitative follow-up of patients with multiple sclerosis using MRI: reproducibility. J Magn Reson Imaging., 9(4): 509-18, April 1999. [WWW]

  229. P S Huppi, S Warfield, R Kikinis, P D Barnes, G P Zientara, F A Jolesz, M K Tsuji, and J J Volpe. Quantitative magnetic resonance imaging of brain development in premature and mature newborns. Ann Neurol., 43(2): 224-35, February 1998. [WWW] [doi: 10.1002/ana.410430213]

  230. S K Warfield, F A Jolesz, and R Kikinis. A high performance computing approach to the registration of medical imaging data. Parallel Computing, 24(9-10):1345-1368, October 1998.

  231. D V Iosifescu, M E Shenton, S K Warfield, R Kikinis, J Dengler, F A Jolesz, and R W McCarley. An automated registration algorithm for measuring MRI subcortical brain structures. Neuroimage, 6(1): 13-25, July 1997. [WWW] [doi: 10.1006/nimg.1997.0274]

  232. S K Warfield. Fast k-NN Classification for multichannel image data. Pattern Recog Lett., 17(7):713-721, 1996.

  233. S Warfield, J Dengler, J Zaers, C R Guttmann, W M Wells, G J Ettinger, J Hiller, and R Kikinis. Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions. J Image Guid Surg., 1(6): 326-38, 1995. [WWW] [doi: 10.1002/(SICI)1522-712X(1995)1:6<326::AID-IGS4>3.0.CO;2-C]