Articles in journal or book chapters

  1. B Scherrer, A Gholipour, S K Warfield. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal., 2012, in press. [WWW] [doi: 10.1016/j.media.2012.05.003]

  2. WW Lewis, M Sahin, B Scherrer, J M Peters, R O Suarez, V K Vogel-Farley, S S Jeste, M C Gregas, S P Prabhu, C A Nelson, S K Warfield. Impaired Language Pathways in Tuberous Sclerosis Complex Patients with Autism Spectrum Disorders. Cereb Cortex. 2012, in press. [WWW] [doi: 10.1093/cercor/bhs135]

  3. M J Callahan, M Bittman, R V Mulkern, A Bousvaros, S K Warfield. Characterization of fast and slow diffusion from diffusion-weighted MRI of pediatric Crohn’s disease. Journal of Magnetic Resonance Imaging, 2012, in press. [PDF]

  4. M Freiman, S D Voss, R V Mulkern, J M Perez-Rossello, M J Callahan, S K Warfield. In-vivo assessment of optimal b-value range for perfusion-insensitive apparent diffusion coefficient imaging. Medical Physics, 39(8):4832-4839, 2012. [WWW] [doi: 10.1118/1.4736516] [PDF]

  5. D E Hyde, F H Duffy and S K Warfield. Anisotropic partial volume CSF modeling for EEG source localization. Neuroimage. 62(3): 2161-2170, 2012. [WWW] [doi: 10.1016/j.neuroimage.2012.05.055]

  6. M Freiman, S D Voss, R V Mulkern, J M Perez-Rossello, M J Callahan, S K Warfield. Reliable assessment of perfusivity and diffusivity from diffusion imaging of the body. Med Image Comput Comput Assist Interv., 2012, in press. [PDF]

  7. O Commowick, A Akhondi-Asl, S K Warfield. Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE. IEEE Trans Med Imaging, 2012, in press. [PDF]

  8. A Gholipour, A Akhondi-Asl, J A Estroff, S K Warfield. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage, 60(3):1819-31, 2012. [WWW] [doi: 10.1016/j.neuroimage.2012.01.128]

  9. H Als, F H Duffy, G McAnulty, S C Butler, L Lightbody, S Kosta, N I Weisenfeld, R Robertson, R B Parad, S A Ringer, J G Blickman, D Zurakowski, S K Warfield. NIDCAP improves brain function and structure in preterm infants with severe intrauterine growth restriction. J Perinatol., 2012, in press. [WWW] [doi: 10.1038/jp.2011.201] [PDF]

  10. L M Vigneron, L Noels, S K Warfield, J G Verly, P A Robe. Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Int J Biomed Imaging. 2012:872783, 2012. [WWW] [doi: 10.1155/2012/872783] [PDF]

  11. D K Thompson, Z M Ahmadzai, S J Wood, T E Inder, S K Warfield, L W Doyle, G F Egan. Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing. Neuroinformatics, 10(2):173-80, 2012. [WWW] [doi: 10.1007/s12021-011-9137-7]

  12. D K Thompson, T E Inder, N Faggian, S K Warfield, P J Anderson, L W Doyle, G F Egan. Corpus callosum alterations in very preterm infants: Perinatal correlates and 2-year neurodevelopmental outcomes. Neuroimage, 59(4):3571-81, 2012. [WWW] [doi: 10.1016/j.neuroimage.2011.11.057]

  13. R O Suarez, O Commowick, S P Prabhu, S K Warfield. Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. Neuroimage, 59(4):3690-700, 2012. [WWW] [doi: 10.1016/j.neuroimage.2011.11.043] [PDF]

  14. A Akhondi-asl, A Hans, B Scherrer, J M Peters and S K Warfield. Whole brain group network analysis using network bias and variance parameters. ISBI 2012, in press. [PDF]

  15. X Tomas-Fernandez and S K Warfield. Population intensity outliers or a new model for brain WM abnormalities. ISBI 2012, in press. [PDF]

  16. M Taquet, B Macq, S K Warfield. A Generalized Correlation Coefficient: Application to DTI and Multi-Fiber DTI. MMBIA 2012, pp. 9-14. [PDF]

  17. J M Peters, M Sahin, V K Vogel-Farley, S S Jeste, C A Nelson 3rd, M C Gregas, S P Prabhu, B Scherrer, S K Warfield. Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex. Acad Radiol. 19(1):17-25, 2012. [WWW] [doi: 10.1016/j.acra.2011.08.016] [PDF]

  18. C Clouchoux, D Kudelski, A Gholipour, S K Warfield, S Viseur, M Bouyssi-Kobar, J L Mari, A C Evans, A J du Plessis, C Limperopoulos. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct.,217(1):127-39, 2012. [WWW] [doi: 10.1007/s00429-011-0325-x] [PDF]

  19. P Wintermark, A Hansen, M C Gregas, J Soul, M Labrecque, R L Robertson, S K Warfield. Brain perfusion in asphyxiated newborns treated with therapeutic hypothermia. AJNR Am J Neuroradiol. 32(11):2023-9, 2011. [WWW] [doi: 10.3174/ajnr.A2708]

  20. L M Vigneron, S K Warfield, P A Robe, J G Verly. 3D XFEM-based modeling of retraction for preoperative image update. Comput Aided Surg., 16(3):121-34, 2011. [WWW] [doi: 10.3109/10929088.2011.570090]

  21. A Akselrod-Ballin, D Bock, R C Reid, S K Warfield. Accelerating image registration with the johnson-lindenstrauss lemma: application to imaging 3-d neural ultrastructure with electron microscopy. IEEE Trans Med Imaging, 30(7): 1427-38, 2011. [WWW] [doi: 10.1109/TMI.2011.2125797]

  22. N I Weisenfeld and S K Warfield. Learning Likelihoods for Labeling (L3): A General Multi-Classifier Segmentation Algorithm. Med Image Comput Comput Assist Interv., 14(Pt 3):322-329, 2011. [PDF] [WWW]

  23. M Freiman, S D Voss, R V Mulkern, J M Perez-Rossello and S K Warfield. Quantitative Body DW-MRI Biomarkers Uncertainty Estimation Using Unscented Wild-Bootstrap. Med Image Comput Comput Assist Interv., 14(Pt 2):74-81, 2011. [WWW] [PDF]

  24. B Scherrer and S K Warfield. Super resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv., 14(Pt 2):124-132, 2011. [WWW] [PDF]

  25. M Taquet, B Macq and S K Warfield. Spatially adaptive log-Euclidean polyaffine registration based on sparse matches. Med Image Comput Comput Assist Interv., 14(Pt 2):590-597, 2011. [WWW] [PDF]

  26. M Freiman, S Voss, S K Warfield. Demons registration with local affine adaptive regularization: application to registration of abdominal structures. ISBI 2011, pp. 1219-1222. [PDF]

  27. B Scherrer and S K Warfield. Toward an accurate multi-fiber assessment strategy for clinical practice. ISBI 2011, pp. 2140-2143. [PDF]

  28. X Tomas-Fernandez and S K Warfield. A new classifier feature space for an improved multiple sclerosis lesion segmentation. ISBI 2011, pp. 1492-1495. [PDF]

  29. D E Hyde and S K Warfield. Anisotropic Equivalent Conductivity Tensors for Bioelectric Modeling of Partial Volume Effects in Cerebrospinal Fluid Space. ISBI 2011, pp. 1109-1112. [PDF]

  30. N I Weisenfeld and S K Warfield. Soft STAPLE: Truth and Performance Level Estimation From Probabilistic Segmentations. ISBI 2011, pp. 441-446.

  31. A Akhondi-asl and S K Warfield. Cortical brain structures segmentation using constrained optimization and intensity coupling. ISBI 2011, pp. 2022-2025. [PDF]

  32. A Gholipour, M Polak, A van der Kouwe, E Nevo, S K Warfield. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Conf Proc IEEE Eng Med Biol Soc., 2011:5722-5, 2011. [WWW] [doi: 10.1109/IEMBS.2011.6091385] [PDF]

  33. A Gholipour, N Kehtarnavaz, B Scherrer, S K Warfield. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc., 2011:6997-7000, 2011. [WWW] [doi: 10.1109/IEMBS.2011.6091769] [PDF]

  34. A Gholipour, J A Estroff, C E Barnewolt, S A Connolly, S K Warfield. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Computer Assisted Radiology and Surgery, 6(3): 329-39, 2011. [WWW] [doi: 10.1007/s11548-010-0512-x] [PDF]

  35. D K Thompson, T E Inder, N Faggian, L Johnston, S K Warfield, P J Anderson, L W Doyle, G F Egan. Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. Neuroimage, 15; 55(2): 479-90 2011. [WWW] [doi: 10.1016/j.neuroimage.2010.12.025]

  36. L Hoyte, W Ye, L Brubaker, J R Fielding, M E Lockhart, M E Heilbrun, M B Brown, S K Warfield, Pelvic Floor Disorders Network. Segmentations of MRI images of the female pelvic floor: a study of inter- and intra-reader reliability. J Magn Reson Imaging, 33(3): 684-91, 2011. [WWW] [doi: 10.1002/jmri.22478]

  37. P Wintermark, A Hansen, J Soul, M Labrecque, R L Robertson, S K Warfield. Early versus late MRI in asphyxiated newborns treated with hypothermia. Arch Dis Child Fetal Neonatal Ed., 96(1): F36-44 2011. [WWW] [doi: 10.1136/adc.2010.184291]

  38. P Wintermark, M Labrecque, S K Warfield, S Dehart, A Hansen. Can induced hypothermia be assured during brain MRI in neonates with hypoxic-ischemic encephalopathy? Pediatr Radiol., 40(12): 1950-4 2010. [WWW] [doi: 10.1007/s00247-010-1816-2] [PDF]

  39. A Wittek, G Joldes, M Couton, S K Warfield, K Miller. Patient-specific non-linear finite element modelling for predicting soft organ deformation in real-time: application to non-rigid neuroimage registration. Prog Biophys Mol Biol, 103(2-3): 292-303 2010. [WWW] [doi: 10.1016/j.pbiomolbio.2010.09.001]

  40. A Gholipour, J A Estroff, M Sahin, S P Prabhu, S K Warfield. Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. Med Image Comput Comput Assist Interv., 13(Pt 2):109-16 2010. [WWW] [PDF]

  41. O Commowick and S K Warfield. Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE. Med Image Comput Comput Assist Interv., 13(Pt 3): 25-32 2010. [WWW] [PDF]

  42. A Gholipour, J A Estroff, S K Warfield. Robust Super-resolution Volume Reconstruction from Slice Acquisitions: Application to Fetal Brain MRI. IEEE Trans Med Imaging., 29(10):1739-58 2010. [WWW] [doi: 10.1109/TMI.2010.2051680] [PDF]

  43. O Commowick and S K Warfield. Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from STAPLE. IEEE Trans Med Imaging, 29(3):771-80 2010. [WWW] [doi: 10.1109/TMI.2009.2036011] [PDF]

  44. B Scherrer and S K Warfield. Why Multiple B-Values are Required for Multi-Tensor Models. Evaluation with a Constrained Log-Euclidean Model. ISBI 2010, pp. 1389-92. [PDF]

  45. B Scherrer and S K Warfield. Optimal HARDI acquisition schemes for multi-tensor models. In: International Symposium on Magnetic Resonance in Medicine (ISMRM) 2010, Stockholm, Sweden. [PDF]

  46. J W Lee, P Y Wen, S Hurwitz, P Black, S Kesari, J Drappatz, A J Golby, W M Wells, S K Warfield, R Kikinis, E B Bromfield. Morphological characteristics of brain tumors causing seizures. Arch Neurol., 67(3):336-42 2010. [WWW] [doi: 10.1001/archneurol.2010.2]

  47. M Krishnan, O Commowick, S S Jeste, N Weisenfeld, A Hans, M Gregas, M Sahin, and S K Warfield. Diffusion features of white matter in Tuberous Sclerosis Complex assessed with tractography. Pediatric Neurology, 42(2):101-6 2010. [WWW] [doi: 10.1016/j.pediatrneurol.2009.08.001] [PDF]

  48. J Fripp, S Crozier, S K Warfield, and S Ourselin. Automatic segmentation and quantitative analysis of the articular cartilages from magnetic resonance images of the knee. IEEE Trans Med Imagine, 29(1): 55-64 2010. [WWW] [doi: 10.1109/TMI.2009.2024743]

  49. P Wintermark, T Boyd, M M Parast, L J Van Marter, S K Warfield, R L Robertson, and S A Ringer. Fetal Placental Thrombosis and Neonatal Implications. Am J Perinatol. 27(3):251-6 2010. [WWW] [doi : 10.1055/s-0029-1239486] [PDF]

  50. L M Vigneron, R C Boman, J-P Ponthot, P A Robe, S K Warfield and J G Verly. Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery. Journal of Computational and Applied Mathematics. 2009, in press.

  51. N I Weisenfeld and S K Warfield. A data-driven approach to discovering common brain anatomy. In: Biomedical Imaging: From Nano to Macro, 2009 (ISBI 2009), pages 217-220 2009. [PDF]

  52. A Akselrod-Ballin, D Bock, R C Reid, and S K Warfield. Improved registration for large electron microscopy images. In: Biomedical Imaging: From Nano to Macro, 2009 (ISBI 2009), pages 434-437, 2009. [PDF]

  53. O Commowick, S K Warfield and G Malandain. Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. Med Image Comput Comput Assist Interv., 12(Pt 2):993-1000 2009. [PDF]

  54. A Akselrod-Ballin, D Bock, R C Reid and S K Warfield. Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma. Med Image Comput Comput Assist Interv., 12(Pt 1):632-9 2009. [PDF]

  55. G R Joldes, A Wittek, M Couton, S K Warfield and K Miller. Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms. Med Image Comput Comput Assist Interv., 12(Pt 2):300-7 2009. [PDF]

  56. A Gholipour and S K Warfield. Super-resolution reconstruction of fetal brain MRI. In:MICCAI Workshop on Image Analysis for the Developing Brain (IADB'2009), C. Studholme and F. Rousseau, Eds., London, UK, 24 Sept. 2009, pp. 45-52. [PDF]

  57. O Commowick and S K Warfield. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. Inf Process Med Imaging., 21:701-12 2009. [WWW]

  58. M Schaap, C T Metz, T van Walsum, A G van der Giessen, A C Weustink, N R Mollet, C Bauer, H Bogunovic, C Castro, X Deng, E Dikici, T O'Donnell, M Frenay, O Friman, M Hernández Hoyos, P H Kitslaar, K Krissian, C Kühnel, M A Luengo-Oroz, M Orkisz, O Smedby, M Styner, A Szymczak, H Tek, C Wang, S K Warfield, S Zambal, Y Zhang, G P Krestin, and W J Niessen. Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Med Image Anal., 13(5):701-14 2009. [WWW] [doi: 10.1016/j.media.2009.06.003]

  59. L M Vigneron, M P Duflot, P A Robe, S K Warfield, and J G Verly . 2D XFEM-based modeling of retraction and successive resections for preoperative image update. Comput Aided Surg., Jul 27:1-20 2009. [WWW] [doi: 10.1080/10929080903052677]

  60. J N L Benders, F Groenendaal, F van Bel, R Ha Vinh, J Dubois, J F Lazeyras, S K Warfield, P S Huppi, and L S de Vries. Brain development of the preterm neonate after neonatal hydrocortisone treatment for chronic lung disease Pediatric Research 66(5):555-9 2009. [WWW] [doi: 10.1203/PDR.0b013e3181b3aec5]

  61. N I Weisenfeld and S K Warfield. Automatic Segmentation of Newborn Brain MRI. Neuroimage, 47(2):564-72 August 2009. [WWW] [doi: 10.1016/j.neuroimage.2009.04.068] [PDF]

  62. O Commowick and S K Warfield. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis. IEEE TMI, 28(6):838-846 2009. [WWW] [doi: 10.1109/TMI.2008.2010438] [PDF]

  63. M Rullmann, A Anwander, M Dannhauer, S K Warfield, F H Duffy, and CH Wolters. EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. Neuroimage, 44(2):399-410 2009. [WWW] [doi:10.1016/j.neuroimage.2008.09.009] [PDF]

  64. D K Thompson, S J Wood, L W Doyle, S K Warfield, G F Egan, and T E Inder MR-determined hippocampal asymmetry in full-term and pre-term neonates. Hippocampus 19(2):118-23 2009. [WWW] [doi: 10.1002/hipo.20492] [PDF]


  65. M S De Craene, B Macq, F Marques, P Salembier, and S K Warfield. Unbiased Group-wise Alignment by Iterative Central Tendency Estimation. Math. Model. Nat. Phenom., 3(6):2-32 2008. [PDF]


  66. Ž Špiclin, A Hans, F H Duffy, S K Warfield, B Likar, and F Pernus. EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 11(Pt 1):762-70, 2008. [WWW] [PDF]


  67. O Commowick, P Fillard, O Clatz, and S K Warfield. Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients.Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 11(Pt 1):975-82, 2008. [WWW] [PDF]


  68. S K Warfield, K H Zou, and W M Wells. Validation of image segmentation by estimating rater bias and variance. Phil. Trans. R. Soc. A, 366(1874):2361-75, April 2008. [WWW] [doi: 10.1098/rsta.2008.0040] [PDF]


  69. D K Thompson, S J Wood, L W Doyle, S K Warfield, G A Lodygensky, P J Anderson, G F Egan, and T E Inder. Neonate Hippocampal Volumes: Prematurity, Perinatal Predictors, and 2-Year Outcome. Annals of Neurology, 63(5):642-51, April 2008. [WWW][doi: 10.1002/ana.21367] [PDF]


  70. G A Lodygensky, M L Seghier, S K Warfield, C B Tolsa, S Sizonenko, F Lazeyras, and P S Huppi. Intrauterine Growth Restriction Affects the Preterm Infant's Hippocampus. Pediatr Res, 63(4):438-443, April 2008. [WWW] [doi: 10.1203/PDR.0b013e318165c005] [PDF]


  71. M J Rivkin, P E Davis, J L Lemaster, H J Cabral, S K Warfield, R V Mulkern, C D Robson, R Rose-Jacobs, and D A Frank Volumetric MRI study of brain in children with intrauterine exposure to cocaine, alcohol, tobacco, and marijuana. Pediatrics., 121(4): 741-50, April 2008. [WWW] [doi: 10.1542/peds.2007-1399] [PDF]


  72. M Maddah, W E Grimson, S K Warfield and W M Wells. A unified framework for clustering and quantitative analysis of white matter fiber tracts. Med Image Anal,12(2):191-202, April 2008. [WWW] [doi: 10.1016/j.media.2007.10.003] [PDF]


  73. J Dubois, M Benders, C Borradori-Tolsa, A Cachia, F Lazeyras, R Ha-Vinh Leuchter, S V Sizonenko, S K Warfield, J F Mangin, and P S Hüppi. Primary cortical folding in the human newborn: an early marker of later functional development. Brain, 131:2028-2041, August 2008. [WWW] [doi: 10.1093/brain/awn137] [PDF]


  74. L Hoyte, M S Damaser, S K Warfield, G Chukkapalli, A Majumdar, D J Choi, A Trivedi, and P Krysl. Quantity and distribution of levator ani stretch during simulated vaginal childbirth. Am J Obstet Gynecol, 199(2):198.e1-198.e5, August 2008. [WWW] [doi: 10.1016/j.ajog.2008.04.027] [PDF]


  75. J J Wisco, D L Rosene, R J Killiany, M B Moss, S K Warfield, S Egorova, Y Wu, Z Liptak, J Warner, and C R Guttmann. A rhesus monkey reference label atlas for template driven segmentation. J Med Primatol, 37(5):250-60, October 2008. [WWW] [doi: 10.1111/j.1600-0684.2008.00288.x] [PDF]


  76. J J Wisco, R J Killiany, C R Guttmann, S K Warfield, M B Moss, and D L Rosene. An MRI study of age-related white and gray matter volume changes in the rhesus monkey. Neurobiol Aging, 29(10):1563-75, Oct 2008. [WWW] [doi: 10.1016/j.neurobiolaging.2007.03.022] [PDF]


  77. N Archip, O Clatz, S Whalen, S P Dimaio, P M Black, F A Jolesz, A Golby, and S K Warfield. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery. Neurosurgery, 62(3 Suppl 1):209-15; discussion 215-6, March 2008. [WWW] [doi: 10.1227/01.neu.0000317395.08466.e6] [PDF]


  78. A Wittek, K Miller, R Kikinis, and S K Warfield. Patient-specific model of brain deformation: Application to medical image registration. J Biomech, 40(4): 919-29 2007. [WWW] [doi:10.1016/j.jbiomech.2006.02.021]


  79. D K Thompson, S K Warfield, J B Carlin, M Pavlovic, H X Wang, M Bear, M J Kean, L W Doyle, G F Egan, and T E Inder. Perinatal risk factors altering regional brain structure in the preterm infant. Brain, 130(Pt 3): 667-77 March 2007. [WWW] [doi:10.1093/brain/awl277]


  80. M Maddah, W M Wells, S K Warfield, C F Westin, and W E Grimson Probabilistic clustering and quantitative analysis of white matter fiber tracts. Inf Process Med Imaging, 20: 372-83 2007. [WWW]


  81. J Fripp, S Crozier, S K Warfield, and S Ourselin Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Phys Med Biol, 52(6): 1617-31, March 2007. [WWW] [doi: 10.1088/0031-9155/52/6/005]


  82. N Archip, O Clatz, S Whalen, D Kacher, A Fedorov, A Kot, N Chrisochoides, F Jolesz, A Golby, P M Black, and S K Warfield. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage, 35(2): 609-24, April 2007. [WWW] [doi: 10.1016/j.neuroimage.2006.11.060] [PDF]

  83. S Alayon, R Robertson, S K Warfield and J Ruiz-Alzola. A fuzzy system for helping medical diagnosis of malformations of cortical development. Biomed Inform, 40(3):221-35, June 2007. [WWW] [doi: 10.1016/j.jbi.2006.11.002]


  84. A U Mewes, L Zollei, P S Huppi, H Als, G B McAnulty, T E Inder, W M Wells, and S K Warfield. Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. Neuroimage, 15;36(4):1074-85, July 2007. [WWW] [doi: 10.1016/j.neuroimage.2007.04.011]


  85. J Dauguet, S Peled, V Berezovskii, T Delzescaux, S K Warfield, R Born and C F Westin. Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. Neuroimage, 37(2):530-8, August 2007. [WWW] [doi: 10.1016/j.neuroimage.2007.04.067]


  86. N Archip, F A Jolesz, and S K Warfield. A validation framework for brain tumor segmentation. Acad Radiol, 14(10):1242-51, October 2007. [WWW] [doi: 10.1016/j.acra.2007.05.025]


  87. K T Downing, L P Hoyte, S K Warfield, and A C Weidner. Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping. Am J Obstet Gynecol, 197(6):625.e1-4, December 2007. [WWW] [doi: 10.1016/j.ajog.2007.08.015 ]


  88. N Archip, S Tatli, P Morrison, F Jolesz, S K Warfield, and S Silverman. Non-rigid registration of pre-procedural MR images with intra-procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 10(Pt 2): 969-77, 2007. [WWW]


  89. J Dauguet, D Bock, R C Reid, and S K Warfield. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 10(Pt 2): 710-7, 2007. [WWW]


  90. J Fripp, S Crozier, S K Warfield, and S Ourselin. Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 10(Pt 2): 186-94, 2007. [WWW]


  91. S P Dimaio, N Archip, N Hata, I F Talos, S K Warfield, A Majumdar, N Mcdannold, K Hynynen, P R Morrison, W M Wells, D F Kacher, R E Ellis, A J Golby, P M Black, F A Jolesz, and R Kikinis. Image-guided neurosurgery at Brigham and Women's Hospital. IEEE Eng Med Biol Mag, 25(5):67-73, Sep-Oct 2006. [WWW]


  92. A Fedorov, N Chrisochoides, R Kikinis, and S K Warfield. An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006, 1:658-661, 2006. [PDF]

  93. D Goldberg-Zimring and S K Warfield. Novel image processing techniques to better understand white matter disruption in multiple sclerosis. Autoimmun Rev, 5(8):544-548, October 2006. [WWW] [doi:10.1016/j.autrev.2006.06.003]


  94. P Jannin, E Krupinski, and S K Warfield. Validation in medical image processing. IEEE Trans Med Imaging, 25(11):1405-1409, November 2006. [WWW]


  95. A U Mewes, P S Hueppi, H Als, F J Rybicki, T E Inder, G B McAnulty, R V Mulkern, R L Robertson, M J Rivkin, and S K Warfield. Regional brain development in serial magnetic resonance imaging of low-risk preterm infants. Pediatrics, 118(1):23-33, July 2006. [WWW] [doi:10.1542/peds.2005-2675]


  96. D K Shah, P J Anderson, J B Carlin, M Pavlovic, K Howard, D K Thompson, S K Warfield, and T E Inder. Reduction in cerebellar volumes in preterm infants: relationship to white matter injury and neurodevelopment at two years of age. Pediatr Res, 60(1):97-102, July 2006. [WWW] [doi:10.1203/01.pdr.0000220324.27597.f0]


  97. D K Shah, C Guinane, P August, N C Austin, L J Woodward, D K Thompson, S K Warfield, R Clemett, and T E Inder. Reduced occipital regional volumes at term predict impaired visual function in early childhood in very low birth weight infants. Invest Ophthalmol Vis Sci, 47(8):3366-3373, August 2006. [WWW] [doi:10.1167/iovs.05-0811]


  98. Y Wu, S K Warfield, I L Tan, W M Wells, D S Meier, R A van Schijndel, F Barkhof, and C R Guttmann. Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. Neuroimage, 32(3):1205-1215, September 2006. [WWW] [doi:10.1016/j.neuroimage.2006.04.211]


  99. N I Weisenfeld, A U Mewes, and S K Warfield. Highly accurate segmentation of brain tissue and subcortical gray matter from newborn MRI. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 9(Pt 1): 199-206, 2006. [WWW] [PDF]


  100. J Dauguet, S Peled, V Berezovskii, T Delzescaux, S K Warfield, R Born, and C F Westin. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 9(Pt 1): 109-16, 2006. [WWW]


  101. S K Warfield, K H Zou, and W M Wells. Validation of image segmentation by estimating rater bias and variance. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv., 9(Pt 2): 839-47, 2006. [WWW] [PDF]


  102. N Archip, R Rohling, P Cooperberg, H Tahmasebpour, and S K Warfield. Spectral clustering algorithms for ultrasound image segmentation. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 2):862-869, 2005. [WWW]


  103. O Clatz, H Delingette, I F Talos, A J Golby, R Kikinis, F A Jolesz, N Ayache, and S K Warfield. Hybrid formulation of the model-based non-rigid registration problem to improve accuracy and robustness. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 2):295-302, 2005. [WWW]


  104. O Clatz, H Delingette, I F Talos, A J Golby, R Kikinis, F A Jolesz, N Ayache, and S K Warfield. Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans Med Imaging, 24(11):1417-1427, November 2005. [WWW] [PDF]


  105. O Clatz, M Sermesant, P Y Bondiau, H Delingette, S K Warfield, G Malandain, and N Ayache. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans Med Imaging, 24(10):1334-1346, October 2005. [WWW]


  106. D Goldberg-Zimring, A U Mewes, M Maddah, and S K Warfield. Diffusion tensor magnetic resonance imaging in multiple sclerosis. J Neuroimaging, 15(4 Suppl):-81, 2005. [WWW] [doi:10.1177/1051228405283363] [PDF]


  107. H Haidar, S K Warfield, and J S Soul. Talairach-based parcellation of neonatal brain magnetic resonance imaging data: validation of a new approach. J Neuroimaging, 15(4):305-314, October 2005. [WWW] [doi:10.1177/1051228405279041]


  108. S Haker, W M Wells, S K Warfield, I F Talos, J G Bhagwat, D Goldberg-Zimring, A Mian, L Ohno-Machado, and K H Zou. Combining classifiers using their receiver operating characteristics and maximum likelihood estimation. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 1):506-514, 2005. [WWW]


  109. T E Inder, S K Warfield, H Wang, P S Hüppi, and J J Volpe. Abnormal cerebral structure is present at term in premature infants. Pediatrics, 115(2):286-294, February 2005. [WWW] [doi:10.1542/peds.2004-0326]


  110. C Limperopoulos, J S Soul, K Gauvreau, P S Huppi, S K Warfield, H Bassan, R L Robertson, J J Volpe, and A J du Plessis. Late gestation cerebellar growth is rapid and impeded by premature birth. Pediatrics, 115(3):688-695, March 2005. [WWW] [doi:10.1542/peds.2004-1169]


  111. C Limperopoulos, J S Soul, H Haidar, P S Huppi, H Bassan, S K Warfield, R L Robertson, M Moore, P Akins, J J Volpe, and A J du Plessis. Impaired trophic interactions between the cerebellum and the cerebrum among preterm infants. Pediatrics, 116(4):844-850, October 2005. [WWW] [doi:10.1542/peds.2004-2282]


  112. M Maddah, A U Mewes, S Haker, W E Grimson, and S K Warfield. Automated atlas-based clustering of white matter fiber tracts from DTMRI. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 1):188-195, 2005. [WWW]


  113. A Tsai, W M Wells, S K Warfield, and A S Willsky. An EM algorithm for shape classification based on level sets. Med Image Anal, 9(5):491-502, October 2005. [WWW] [doi:10.1016/j.media.2005.05.001]


  114. J F Verhey, J Wisser, S K Warfield, J Rexilius, and R Kikinis. Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model. Biomed Eng Online, 4(1):19-19, 2005. [WWW] [doi:10.1186/1475-925X-4-19]


  115. S K Warfield, S J Haker, I F Talos, C A Kemper, N Weisenfeld, A U Mewes, D Goldberg-Zimring, K H Zou, C F Westin, W M Wells, C M Tempany, A Golby, P M Black, F A Jolesz, and R Kikinis. Capturing intraoperative deformations: research experience at Brigham and Women's Hospital. Med Image Anal, 9(2):145-162, April 2005. [WWW] [doi:10.1016/j.media.2004.11.005]


  116. L C Wiegand, S K Warfield, J J Levitt, Y Hirayasu, D F Salisbury, S Heckers, S Bouix, D Schwartz, M Spencer, C C Dickey, R Kikinis, F A Jolesz, R W McCarley, and M E Shenton. An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis. Am J Psychiatry, 162(1):65-70, January 2005. [WWW] [doi:10.1176/appi.ajp.162.1.65]


  117. A Wittek, R Kikinis, S K Warfield, and K Miller. Brain shift computation using a fully nonlinear biomechanical model. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, 8(Pt 2):583-590, 2005. [WWW]


  118. L Wolfson, X Wei, C B Hall, V Panzer, D Wakefield, R R Benson, J A Schmidt, S K Warfield, and C R Guttmann. Accrual of MRI white matter abnormalities in elderly with normal and impaired mobility. J Neurol Sci, 232(1-2):23-27, May 2005. [WWW] [doi:10.1016/j.jns.2004.12.017]


  119. K H Zou, D N Greve, M Wang, S D Pieper, S K Warfield, N S White, S Manandhar, G G Brown, M G Vangel, R Kikinis, and W M Wells. Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology, 237(3):781-789, December 2005. [WWW] [doi:10.1148/radiol.2373041630]


  120. K H Zou, K Tuncali, S K Warfield, C P Zentai, D Worku, P R Morrison, and S G Silverman. Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations: the value of supervised learning. Acad Radiol, 12(4):444-450, April 2005. [WWW] [doi:10.1016/j.acra.2004.11.029]


  121. A du Bois d'Aische, M D Craene, X Geets, V Gregoire, B Macq, and S K Warfield. Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Med Image Anal, 9(6):538-546, December 2005. [WWW] [doi:10.1016/j.media.2005.04.003]


  122. H Als, F H Duffy, G B McAnulty, M J Rivkin, S Vajapeyam, R V Mulkern, S K Warfield, P S Huppi, S C Butler, N Conneman, C Fischer, and E C Eichenwald. Early experience alters brain function and structure. Pediatrics, 113(4):846-857, April 2004. [WWW]


  123. N G Anderson, S K Warfield, S Wells, C Spencer, A Balasingham, J J Volpe, and T E Inder. A limited range of measures of 2-D ultrasound correlate with 3-D MRI cerebral volumes in the premature infant at term. Ultrasound Med Biol, 30(1):11-18, January 2004. [WWW] [doi:10.1016/j.ultrasmedbio.2003.10.001]


  124. D Goldberg-Zimring, A Achiron, S K Warfield, C R Guttmann, and H Azhari. Application of spherical harmonics derived space rotation invariant indices to the analysis of multiple sclerosis lesions' geometry by MRI. Magn Reson Imaging, 22(6):815-825, July 2004. [WWW] [doi:10.1016/j.mri.2004.01.053]


  125. L Hoyte, M Jakab, S K Warfield, S Shott, G Flesh, and J R Fielding. Levator ani thickness variations in symptomatic and asymptomatic women using magnetic resonance-based 3-dimensional color mapping. Am J Obstet Gynecol, 191(3):856-861, September 2004. [WWW] [doi:10.1016/j.ajog.2004.06.067]


  126. S G Silverman, M R Sun, K Tuncali, P R Morrison, E vanSonnenberg, S Shankar, K H Zou, and S K Warfield. Three-dimensional assessment of MRI-guided percutaneous cryotherapy of liver metastases. AJR Am J Roentgenol, 183(3):707-712, September 2004. [WWW]


  127. C B Tolsa, S Zimine, S K Warfield, M Freschi, A Sancho Rossignol, F Lazeyras, S Hanquinet, M Pfizenmaier, and P S Huppi. Early alteration of structural and functional brain development in premature infants born with intrauterine growth restriction. Pediatr Res, 56(1):132-138, July 2004. [WWW] [doi:10.1203/01.PDR.0000128983.54614.7E]


  128. S K Warfield, K H Zou, and W M Wells. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging, 23(7):903-921, July 2004. [WWW] [PDF]


  129. X Wei, C R Guttmann, S K Warfield, M Eliasziw, and J R Mitchell. Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed?. Mult Scler, 10(4):402-406, August 2004. [WWW] [PDF]


  130. L C Wiegand, S K Warfield, J J Levitt, Y Hirayasu, D F Salisbury, S Heckers, C C Dickey, R Kikinis, F A Jolesz, R W McCarley, and M E Shenton. Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study. Biol Psychiatry, 55(2):131-140, January 2004. [WWW] [PDF]


  131. K H Zou, S K Warfield, A Bharatha, C M Tempany, M R Kaus, S J Haker, W M Wells, F A Jolesz, and R Kikinis. Statistical validation of image segmentation quality based on a spatial overlap index. Acad Radiol, 11(2):178-189, February 2004. [WWW]


  132. K H Zou, W M Wells, R Kikinis, and S K Warfield. Three validation metrics for automated probabilistic image segmentation of brain tumours. Stat Med, 23(8):1259-1282, April 2004. [WWW] [doi:10.1002/sim.1723]


  133. V Grau, A U Mewes, M Alcaniz, R Kikinis, and S K Warfield Improved watershed transform for medical image segmentation using prior information. IEEE Trans Med Imaging., 23(4): 447-58, April 2004. [WWW] [PDF]


  134. S Jaume, M Ferrant, B Macq, L Hoyte, J R Fielding, A Schreyer, R Kikinis, and S K Warfield. Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans Biomed Eng, 50(3):383-390, March 2003. [WWW] [doi: 10.1109/TBME.2003.808828]


  135. K H Zou, S K Warfield, J R Fielding, C M Tempany, M W William, M R Kaus, F A Jolesz, and R Kikinis. Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data. Acad Radiol, 10(12):1359-1368, December 2003. [WWW]


  136. R W Hunt, S K Warfield, H Wang, M Kean, J J Volpe, and T E Inder Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant. J Neurol Neurosurg Psychiatry, 74(5):658-60, May 2003. [WWW]


  137. M Ferrant, A Nabavi, B Macq, P M Black, F A Jolesz, R Kikinis, and S K Warfield. Serial registration of intraoperative MR images of the brain. Med Image Anal, 6(4):337-359, December 2002. [WWW] [PDF]


  138. J R Fielding, L X Hoyte, S A Okon, A Schreyer, J Lee, K H Zou, S K Warfield, J P Richie, K R Loughlin, M P O'Leary, C J Doyle, and R Kikinis. Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness. J Urol, 167(2 Pt 1):559-562, February 2002. [WWW]


  139. M Hirose, A Bharatha, N Hata, K H Zou, S K Warfield, R A Cormack, A D'Amico, R Kikinis, F A Jolesz, and C M Tempany. Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy. Acad Radiol, 9(8):906-912, August 2002. [WWW]


  140. J Ruiz-Alzola, C F Westin, S K Warfield, C Alberola, S Maier, and R Kikinis Nonrigid registration of 3D tensor medical data. Med Image Anal., 6(2): 143-61, June 2002. [WWW]


  141. X Wei, S K Warfield, K H Zou, Y Wu, X Li, A Guimond, J P Mugler, R R Benson, L Wolfson, H L Weiner, and C R Guttmann. Quantitative analysis of MRI signal abnormalities of brain white matter with high reproducibility and accuracy. J Magn Reson Imaging, 15(2):203-209, February 2002. [WWW]


  142. R R Benson, C R Guttmann, X Wei, S K Warfield, C Hall, J A Schmidt, R Kikinis, L I Wolfson Older people with impaired mobility have specific loci of periventricular abnormality on MRI. Neurology, 58(1): 48-55, January 2002. [WWW]


  143. M Ferrant, A Nabavi, B Macq, F A Jolesz, R Kikinis, and S K Warfield. Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model.IEEE Trans Med Imaging, 20(12):1384-97, December 2001. [WWW] [doi: 10.1109/42.974933]


  144. A Bharatha, M Hirose, N Hata, S K Warfield, M Ferrant, K H Zou, E Suarez-Santana, J Ruiz-Alzola, A D'Amico, R A Cormack, R Kikinis, F A Jolesz, and C M Tempany. Evaluation of three-dimensional finite element-based deformable registration of pre- and intraoperative prostate imaging. Med Phys., 28(12): 2551-60 , December 2001. [WWW]


  145. A Nabavi, P M Black, D T Gering, C F Westin, V Mehta, R S Pergolizzi, M Ferrant, S K Warfield, N Hata, R B Schwartz, W M Wells, R Kikinis, and F A Jolesz. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery, 48(4): 787-97; discussion 797-8, April 2001. [WWW]


  146. M R Kaus, S K Warfield, A Nabavi, P M Black, F A Jolesz, and R Kikinis. Automated segmentation of MR images of brain tumors. Radiology, 218(2): 586-91 February 2001. [WWW]


  147. R A Sperling, C R Guttmann, M J Hohol, S K Warfield, M Jakab, M Parente, E L Diamond, K R Daffner, M J Olek, E J Orav, R Kikinis, F A Jolesz, and H L Weiner. Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study. Arch Neurol., 58(1): 115-21, January 2001. [WWW]


  148. N Hata, A Nabavi, W M Wells, S K Warfield, R Kikinis, P M Black, and F A Jolesz. Three-dimensional optical flow method for measurement of volumetric brain deformation from intraoperative MR images. J Comput Assist Tomogr., 24(4): 531-8 July - August 2000. [WWW]


  149. A G Schreyer, J R Fielding, S K Warfield, J H Lee, K R Loughlin, H Dumanli, F A Jolesz, and R Kikinis R. Virtual CT cystoscopy: color mapping of bladder wall thickness. Invest Radiol., 35(5): 331-4, May 2000. [WWW]


  150. S K Warfield, R V Mulkern, C S Winalski, F A Jolesz, and R Kikinis. An image processing strategy for the quantification and visualization of exercise-induced muscle MRI signal enhancement. J Magn Reson Imaging, 11(5): 525-31 May 2000 [WWW]


  151. C R Guttmann, R Benson, S K Warfield, X Wei, M C Anderson, C B Hall, K Abu-Hasaballah, J P Mugler, and L Wolfson. White matter abnormalities in mobility-impaired older persons. Neurology, 54(6): 1277-83, March 2000. [WWW]


  152. S K Warfield, M Kaus, F A Jolesz, and R Kikinis. Adaptive, template moderated, spatially varying statistical classification. Med Image Anal., 4(1): 43-55, March 2000. [WWW] [PDF]


  153. T E Inder, P S Huppi, S Warfield, R Kikinis, G P Zientara, P D Barnes, F Jolesz, and J J Volpe. Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term. Ann Neurol., 46(5): 755-60, November 1999. [WWW]

  154. C R Guttmann, R Kikinis, M C Anderson, M Jakab, S K Warfield, R J Killiany, H L Weiner, and F A Jolesz. Quantitative follow-up of patients with multiple sclerosis using MRI: reproducibility. J Magn Reson Imaging., 9(4): 509-18, April 1999. [WWW]

  155. P S Huppi, S Warfield, R Kikinis, P D Barnes, G P Zientara, F A Jolesz, M K Tsuji, and J J Volpe. Quantitative magnetic resonance imaging of brain development in premature and mature newborns. Ann Neurol., 43(2): 224-35, February 1998. [WWW] [doi: 10.1002/ana.410430213]

  156. S K Warfield, F A Jolesz, and R Kikinis. A high performance computing approach to the registration of medical imaging data. Parallel Computing, 24(9-10):1345-1368, October 1998.

  157. D V Iosifescu, M E Shenton, S K Warfield, R Kikinis, J Dengler, F A Jolesz, and R W McCarley. An automated registration algorithm for measuring MRI subcortical brain structures. Neuroimage, 6(1): 13-25, July 1997. [WWW] [doi: 10.1006/nimg.1997.0274]

  158. S K Warfield. Fast k-NN Classification for multichannel image data. Pattern Recog Lett., 17(7):713-721, 1996.

  159. S Warfield, J Dengler, J Zaers, C R Guttmann, W M Wells, G J Ettinger, J Hiller, and R Kikinis. Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions. J Image Guid Surg., 1(6): 326-38, 1995. [WWW] [doi: 10.1002/(SICI)1522-712X(1995)1:6<326::AID-IGS4>3.0.CO;2-C]