Gholipour Publications

  1. Gholipour A, Estroff JA, Barnewolt CE, Robertson RL, Grant PE, Gagoski B, Warfield SK, Afacan O, Connolly SA, Neil JJ, Wolfberg A, Mulkern RV. Fetal MRI: a technical update with educational aspirations. Concepts in Magnetic Resonance Part A, 7 April 2015, DOI: 10.1002/cmr.a.21321 [PDF]

  2. Erem B, Afacan O, Gholipour A, Warfield SK. Real-Time Dynamic Prediction of Motion during Prospective Motion Correction Helps Reduce Errors Caused by Fast Motions and Delayed Motion Measurements. ISMRM 2015 Abstract [PDF]

  3. Scherrer B, Gholipour A, Afacan O, Prabhu S, Warfield SK. Accelerated motion-robust non-Cartesian multi-shot diffusion-weighted imaging with reconstruction in the image space. ISMRM 2015 Abstract [PDF]

  4. Taimouri V, Gholipour A, Velasco-Annis C, Estroff JA, Warfield SK. A Template-To-Slice Block Matching Approach for Automatic Localization of Brain in Fetal MRI. ISBI 2015 [PDF]  

  5. Velasco-Annis C, Gholipour A, Afacan O, Prabhu SP, Estroff JA, Warfield SK. Normative biometrics for fetal ocular growth using volumetric MRI reconstruction. Prenat Diagn. 2015 Jan 19. [PDF]

  6. A Gholipour, EY Lee, SK Warfield. The anatomy and art of writing a successful grant application: a practical step-by-step approach. Pediatr Radiol. 2014. Dec;44(12):1512-7. doi: 10.1007/s00247-014-3051-8. [PDF]

  7. A Gholipour, C Limperopoulos, S Clancy, C Clouchoux, A Akhondi-Asl, J A Estroff, and S K Warfield. Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. MICCAI 2014. [PDF]

  8. O Afacan, A Gholipour, RV Mulkern, C Barnewolt, S Bairdain, J Estroff, S Connolly, S K Warfield. Assessment of fetal lung maturation from diffusion weighted MRI at 3T. ISMRM 2014 Abstract [PDF]

  9. A Gholipur, O Afacan, B Scherrer, B Erem, S K Warfield. Diffusion Weighted MRI of Moving Subjects based on Motion-Induced Random Oversampling. ISMRM 2014. Abstract [PDF]

  10. A Gholipour, O Afacan, I Aganj, S K Warfield. Super-Resolution MRI Reconstruction in Image, Frequency, and Wavelet Domains. ISMRM 2014. Abstract [PDF]

  11. B Scherrer, A Gholipour, M Sahin, S P Prabhu, S K Warfield. Super-resolution multi-fascicle imaging reveals the presence of both radial and tangential diffusion in the mature cortex using a clinical scanner. ISMRM 2014. Abstract [PDF]

  12. Gholipour A, Estroff JA, Warfield SK. Motion-robust super-resolution fetal brain MRI. ISMRM 2013. Abstract [PDF]

  13. Gholipour A, Limperopoulos C, Clouchoux C, Estroff JA, Warfield SK. Diffeomorphic construction of a normative spatiotemporal fetal brain MRI template, ISMRM 2013. Abstract [PDF]

  14. Afacan O, Gholipour A, Warfield SK. Motion detection for diffusion weighted MRI using EPI phase correction lines, ISMRM 2013. Abstract. [PDF]

  15. C Clouchoux, A J du Plessis, M Bouyssi-Kobar, W Tworetzky, D B McElhinney, D W Brown, A Gholipour, D Kudelski, S K Warfield, R J McCarter, R L Robertson Jr, A C Evans, J W Newburger, C Limperopoulos. Delayed cortical development in fetuses with complex congenital heart disease. Cereb Cortex. 2013 Dec;23(12):2932-43. [WWW] [doi: 10.1093/cercor/bhs281] [PDF].

  16. B Scherrer, A Gholipour, S K Warfield. Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic aquistions. Proc of IEEE Conf Mathematical Methods in Biomedical Image Analysis., 249-254, 9-10 Jan 2012. [WWW] [doi: 10.1109/mmbia.2012.6164759]

  17. B Scherrer, A Gholipour, S K Warfield. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal., 2012, in press. [WWW] [doi: 10.1016/]

  18. A Gholipour, A Akhondi-Asl, J A Estroff, S K Warfield. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage, 60(3):1819-31, 2012. [WWW] [doi: 10.1016/j.neuroimage.2012.01.128]

  19. C Clouchoux, D Kudelski, A Gholipour, S K Warfield, S Viseur, M Bouyssi-Kobar, J L Mari, A C Evans, A J du Plessis, C Limperopoulos. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct., 217(1): 127-39, 2012. [WWW] [doi: 10.1007/s00429-011-0325-x]

  20. A Gholipour, M Polak, A van der Kouwe, E Nevo, S K Warfield. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Conf Proc IEEE Eng Med Biol Soc., 2011:5722-5, 2011. [WWW] [doi: 10.1109/IEMBS.2011.6091385] [PDF]

  21. A Gholipour, N Kehtarnavaz, B Scherrer, S K Warfield. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc., 2011:6997-7000, 2011. [WWW] [doi: 10.1109/IEMBS.2011.6091769] [PDF]

  22. B Scherrer and S K Warfield. Super resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv., 14(Pt 2):124-132, 2011. [WWW]

  23. A Gholipour, J A Estroff, C E Barnewolt, S A Connolly, S K Warfield. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Computer Assisted Radiology and Surgery, 6(3): 329-39, 2011. [WWW] [doi: 10.1007/s11548-010-0512-x] [PDF]

  24. A Gholipour, J A Estroff, M Sahin, S P Prabhu, S K Warfield. Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. Med Image Comput Comput Assist Interv., 13(Pt 2):109-16 2010. [WWW] [PDF]

  25. A Gholipour, J A Estroff, S K Warfield. Robust Super-resolution Volume Reconstruction from Slice Acquisitions: Application to Fetal Brain MRI. IEEE Trans Med Imaging., 29(10):1739-58 2010. [WWW] [doi: 10.1109/TMI.2010.2051680] [PDF]

  26. A Gholipour, N Kehtarnavaz, S Yousefi, K Gopinath, R Briggs. Symmetric deformable image registration via optimization of information theoretic measures. J Image and Vision Computing, 28(6):965-975 2010. [doi: 10.1016/j.imavis.2009.11.012]

  27. A Gholipour and S K Warfield. Super-resolution reconstruction of fetal brain MRI. In:MICCAI Workshop on Image Analysis for the Developing Brain (IADB’2009), C. Studholme and F. Rousseau, Eds., London, UK, 24 Sept. 2009, pp. 45–52. [PDF]

  28. A Gholipour, N Kehtarnavaz, K S Gopinath, and R W Briggs. Cross-validation of deformable registration with field maps in functional magnetic resonance brain imaging. IEEE Journal of Selected Topics in Signal Processing, special issue on fMRI Analysis for Human Brain Mapping, 2(6):854-869 2008. [doi: 10.1109/JSTSP.2008.2007824]

  29. A Gholipour, N Kehtarnavaz, R W Briggs, K S Gopinath, W Ringe, A Whittemore, S Cheshkov, and K Bakhadirov. Validation of brain functional EPI to anatomical MRI registrations. IEEE TBME, 55(2):563-571 2008. [WWW] [doi: 10.1109/TBME.2007.912641]

  30. O Tsang, A Gholipour, N Kehtarnavaz, K Gopinath, R Briggs, I Panahi. Comparison of tissue segmentation algorithms in neuroimage analysis software tools. Conf Proc IEEE Eng Med Biol Soc., 2008:3924-8 2008. [WWW] [doi: 10.1109/IEMBS.2008.4650068]

  31. A Gholipour, N Kehtarnavaz, K S Gopinath, R Briggs, and I Panahi. Average field map image template for echo-planar image analysis. Proc EMBS 30th Int Conf IEEE Engineering in Medicine and Biology, 94-97 2008. [WWW] [doi: 10.1109/IEMBS.2008.4649099]

  32. A Gholipour, N Kehtarnavaz, R W Briggs, M Devous, and K S Gopinath. Brain functional localization: A survey of image registration techniques. IEEE TMI, 26(4):427-451 2007. [WWW] [doi: 10.1109/TMI.2007.892508]

  33. A Gholipour, N Kehtarnavaz, R W Briggs, and K S Gopinath. Kullback-Leibler distance optimization for non-rigid registration of echo-planar to structural magnetic resonance brain images. proc ICIP 14th IEEE Int Conf Image Processing, 6:221-224 2007. [doi: 10.1109/ICIP.2007.4379561]

  34. A Gholipour, N Kehtarnavaz, R W Briggs, and K S Gopinath. A field map guided approach to non-rigid registration of brain EPI to structural MRI. Proc SPIE Medical Imaging, 8(33):651205.1-651205.12 2007. [doi: 10.1117/12.710129]

  35. A Gholipour, N Kehtarnavaz, K S Gopinath, R Briggs, M Devous, and R Haley. Distortion correction via non-rigid registration of functional to anatomical magnetic resonance brain images. Proc ICIP 13th IEEE Int Conf Image Processing, 1181-1184 2006. [doi: 10.1109/ICIP.2006.312768]